{
  "_id": "6a53319d9b92047c28d56667",
  "Package": "Eagle",
  "Type": "Package",
  "Title": "Multiple Locus Association Mapping on a Genome-Wide Scale",
  "Version": "1.0.3",
  "Authors@R": "c(\nperson(\"Andrew\", \"George\", role=c(\"aut\", \"cre\"), email=\"andrew.george@csiro.au\"),\nperson(\"Joshua\", \"Bowden\", role=\"ctb\"),\nperson(\"Ryan\", \"Stephenson\", role=\"ctb\"),\nperson(\"Hyun\", \"Kang\", role=\"ctb\"),\nperson(\"Noah\", \"Zaitlen\", role=\"ctb\"),\nperson(\"Claire\", \"Wade\", role=\"ctb\"),\nperson(\"Andrew\", \"Kirby\", role=\"ctb\"),\nperson(\"David\", \"Heckerman\", role=\"ctb\"),\nperson(\"Mark\", \"Daly\", role=\"ctb\"),\nperson(\"Eleazar\", \"Eskin\", role=\"ctb\") )",
  "Maintainer": "Andrew George <andrew.george@csiro.au>",
  "Author": "Andrew George [aut, cre], Joshua Bowden [ctb], Ryan Stephenson\n[ctb], Hyun Kang [ctb], Noah Zaitlen [ctb], Claire Wade [ctb],\nAndrew Kirby [ctb], David Heckerman [ctb], Mark Daly [ctb],\nEleazar Eskin [ctb]",
  "Description": "An implementation of multiple-locus association mapping on\na genome-wide scale. 'Eagle' can handle inbred or outbred study\npopulations, populations of arbitrary unknown complexity, and\ndata larger than the memory capacity of the computer. Since\n'Eagle' is based on linear mixed models, it is best suited to\nthe analysis of data on continuous traits. However, it can\ntolerate non-normal data. 'Eagle' reports, as its findings, the\nbest set of snp in strongest association with a trait. To\nperform an analysis, run 'OpenGUI()'. This opens a web browser\nto the menu-driven user interface for the input of data, and\nfor performing genome-wide analysis.",
  "License": "GPL-3",
  "Roxygen": "list(wrap=FALSE)",
  "ByteCompile": "TRUE",
  "NeedsCompilation": "yes",
  "URL": "http://eagle.r-forge.r-project.org",
  "Contact": "eaglehelp@csiro.au",
  "Config/pak/sysreqs": "cmake make libuv1-dev zlib1g-dev",
  "Repository": "https://r-forge.r-universe.dev",
  "Date/Publication": "2020-09-18 04:17:09 UTC",
  "RemoteUrl": "https://github.com/r-forge/eagle",
  "RemoteRef": "HEAD",
  "RemoteSha": "7c939a2bfa7cd6add325467c9581ce27b15ebb39",
  "RemoteSubdir": "pkg",
  "Packaged": {
    "Date": "2026-07-12 06:11:58 UTC",
    "User": "root"
  },
  "_user": "r-forge",
  "_type": "src",
  "_file": "Eagle_1.0.3.tar.gz",
  "_fileid": "https://r2.ropensci.org/4519f4d6f3a1a96a1c50b901580b171ac6c1faee5b94fe2edfdb222e36b595b0",
  "_filesize": 1042168,
  "_sha256": "4519f4d6f3a1a96a1c50b901580b171ac6c1faee5b94fe2edfdb222e36b595b0",
  "_expires": "2026-10-20T06:18:03.000Z",
  "_created": "2026-07-12T06:11:58.000Z",
  "_published": "2026-07-12T06:18:05.381Z",
  "_jobs": [
    {
      "job": 86622160621,
      "time": 153,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8256840959"
    },
    {
      "job": 86622160624,
      "time": 151,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8256840311"
    },
    {
      "job": 86622160634,
      "time": 168,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8256842998"
    },
    {
      "job": 86622160647,
      "time": 180,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8256844111"
    },
    {
      "job": 86622160630,
      "time": 117,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8256835601"
    },
    {
      "job": 86622160631,
      "time": 218,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8256849703"
    },
    {
      "job": 86622160644,
      "time": 112,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8256835010"
    },
    {
      "job": 86622160626,
      "time": 309,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8256863210"
    },
    {
      "job": 86621902730,
      "time": 219,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8256818114"
    },
    {
      "job": 86622160612,
      "time": 118,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8256836047"
    },
    {
      "job": 86622160628,
      "time": 110,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8256834679"
    },
    {
      "job": 86622160653,
      "time": 129,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8256837726"
    },
    {
      "job": 86622160645,
      "time": 128,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8256837561"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/r-forge/actions/runs/29182206834",
  "_status": "success",
  "_upstream": "https://github.com/r-forge/eagle",
  "_commit": {
    "id": "7c939a2bfa7cd6add325467c9581ce27b15ebb39",
    "author": "geo047 (Dr ) <andrew.george@csiro.au>",
    "committer": "geo047 (Dr ) <andrew.george@csiro.au>",
    "message": "commit only modified files\n\ngit-svn-id: svn://svn.r-forge.r-project.org/svnroot/eagle@65 edb9625f-4e0d-4859-8d74-9fd3b1da38cb\n",
    "time": 1600402629
  },
  "_maintainer": {
    "name": "Andrew George",
    "email": "andrew.george@csiro.au",
    "login": "geo047",
    "description": "",
    "uuid": 11623682
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.4",
      "role": "Depends"
    },
    {
      "package": "RcppEigen",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "matrixcalc",
      "role": "Imports"
    },
    {
      "package": "shiny",
      "role": "Imports"
    },
    {
      "package": "shinythemes",
      "role": "Imports"
    },
    {
      "package": "shinyBS",
      "role": "Imports"
    },
    {
      "package": "shinyjs",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "parallel",
      "role": "Imports"
    },
    {
      "package": "data.table",
      "role": "Imports"
    },
    {
      "package": "tcltk",
      "role": "Imports"
    }
  ],
  "_owner": "r-forge",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "geo047",
      "count": 64,
      "uuid": 11623682
    },
    {
      "user": "theussl",
      "count": 1,
      "uuid": 22165873
    }
  ],
  "_userbio": {
    "uuid": 75573726,
    "type": "organization",
    "name": " R-Forge",
    "followers": 27,
    "description": "git-svn mirrors from R-Forge"
  },
  "_downloads": {
    "count": 419,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/Eagle"
  },
  "_mentions": 140,
  "_devurl": "https://github.com/r-forge/eagle",
  "_searchresults": 34,
  "_topics": [
    "cpp",
    "openmp"
  ],
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/Eagle.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/r-forge/eagle",
  "_realowner": "r-forge",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.2",
      "date": "2017-08-28"
    },
    {
      "version": "1.1.0",
      "date": "2018-08-22"
    },
    {
      "version": "1.2.0",
      "date": "2018-12-17"
    },
    {
      "version": "1.3.0",
      "date": "2019-01-31"
    },
    {
      "version": "1.4.0",
      "date": "2019-04-23"
    },
    {
      "version": "1.5.0",
      "date": "2019-05-17"
    },
    {
      "version": "1.5.1",
      "date": "2019-05-24"
    },
    {
      "version": "1.5.2",
      "date": "2019-08-22"
    },
    {
      "version": "2.0.0",
      "date": "2019-11-07"
    },
    {
      "version": "2.1.0",
      "date": "2019-11-14"
    },
    {
      "version": "2.1.1",
      "date": "2019-11-17"
    },
    {
      "version": "2.2",
      "date": "2020-03-03"
    },
    {
      "version": "2.3",
      "date": "2020-07-22"
    },
    {
      "version": "2.4",
      "date": "2020-08-26"
    },
    {
      "version": "2.4.1",
      "date": "2020-10-19"
    },
    {
      "version": "2.4.2",
      "date": "2020-12-06"
    },
    {
      "version": "2.4.3",
      "date": "2021-01-12"
    },
    {
      "version": "2.4.4",
      "date": "2021-04-22"
    },
    {
      "version": "2.4.5",
      "date": "2021-06-10"
    },
    {
      "version": "2.5",
      "date": "2021-11-30"
    }
  ],
  "_exports": [
    "AM",
    "OpenGUI",
    "ReadMap",
    "ReadMarker",
    "ReadPheno",
    "SummaryAM"
  ],
  "_help": [
    {
      "page": "Eagle-package",
      "title": "A short title line describing what the package does",
      "topics": [
        "Eagle-package",
        "Eagle"
      ]
    },
    {
      "page": "AM",
      "title": "multiple-locus association mapping",
      "topics": [
        "AM"
      ]
    },
    {
      "page": "OpenGUI",
      "title": "Browser-based Graphical User Interface",
      "topics": [
        "OpenGUI"
      ]
    },
    {
      "page": "ReadMap",
      "title": "Read map file",
      "topics": [
        "ReadMap"
      ]
    },
    {
      "page": "ReadMarker",
      "title": "Read marker data.",
      "topics": [
        "ReadMarker"
      ]
    },
    {
      "page": "ReadPheno",
      "title": "Read phenotype file",
      "topics": [
        "ReadPheno"
      ]
    },
    {
      "page": "SummaryAM",
      "title": "Summary of multiple locus association mapping results",
      "topics": [
        "SummaryAM"
      ]
    }
  ],
  "_rundeps": [
    "base64enc",
    "bslib",
    "cachem",
    "cli",
    "commonmark",
    "data.table",
    "digest",
    "fastmap",
    "fontawesome",
    "fs",
    "glue",
    "htmltools",
    "httpuv",
    "jquerylib",
    "jsonlite",
    "later",
    "lifecycle",
    "magrittr",
    "matrixcalc",
    "memoise",
    "mime",
    "otel",
    "promises",
    "R6",
    "rappdirs",
    "Rcpp",
    "RcppEigen",
    "rlang",
    "sass",
    "shiny",
    "shinyBS",
    "shinyjs",
    "shinythemes",
    "sourcetools",
    "withr",
    "xtable"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    },
    {
      "shlib": "libgomp",
      "package": "libgomp1",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "openmp",
      "homepage": "http://gcc.gnu.org/",
      "description": "GCC OpenMP (GOMP) support library"
    }
  ],
  "_score": 3.5314789170422554,
  "_indexed": true,
  "_nocasepkg": "eagle",
  "_universes": [
    "r-forge",
    "geo047"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.3",
      "date": "2026-07-12T06:14:39.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "7c939a2bfa7cd6add325467c9581ce27b15ebb39",
      "fileid": "https://r2.ropensci.org/41842bffe711b1cba191b2a77e8aea290c7e40261597cf95c698d7ca63d5cecc",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/r-forge/actions/runs/29182206834"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.3",
      "date": "2026-07-12T06:14:31.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "7c939a2bfa7cd6add325467c9581ce27b15ebb39",
      "fileid": "https://r2.ropensci.org/3d7880cbff1687ffc8c1e61efc68d03199a57c840ae5e24198e04fea885c86a8",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/r-forge/actions/runs/29182206834"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.0.3",
      "date": "2026-07-12T06:14:50.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "7c939a2bfa7cd6add325467c9581ce27b15ebb39",
      "fileid": "https://r2.ropensci.org/8be176fd40779007fc61f2ec6c337a9283221bbea9e5b471e408650e2a142f39",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/r-forge/actions/runs/29182206834"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.0.3",
      "date": "2026-07-12T06:15:01.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "7c939a2bfa7cd6add325467c9581ce27b15ebb39",
      "fileid": "https://r2.ropensci.org/7d78a276ce1e43bd86eb3dc2a5af576b75bf78e28a66c7e776c0b80314db9d4a",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/r-forge/actions/runs/29182206834"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.3",
      "date": "2026-07-12T06:13:53.000Z",
      "arch": "aarch64",
      "commit": "7c939a2bfa7cd6add325467c9581ce27b15ebb39",
      "fileid": "https://r2.ropensci.org/7f64abdf81333914be4f5c9735c5b9910c91a5c14769b28aa755603da1568eb1",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/r-forge/actions/runs/29182206834"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.3",
      "date": "2026-07-12T06:15:09.000Z",
      "arch": "x86_64",
      "commit": "7c939a2bfa7cd6add325467c9581ce27b15ebb39",
      "fileid": "https://r2.ropensci.org/13c766c1de773aecc39afc4a7bc3cc36c6b95ab0a6cc1320bb68d8261f517083",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/r-forge/actions/runs/29182206834"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.0.3",
      "date": "2026-07-12T06:13:56.000Z",
      "arch": "aarch64",
      "commit": "7c939a2bfa7cd6add325467c9581ce27b15ebb39",
      "fileid": "https://r2.ropensci.org/0d8b9627f0ece671982825b91791037ed85acde7a0b0a1d202a5934cd514531d",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/r-forge/actions/runs/29182206834"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.0.3",
      "date": "2026-07-12T06:15:55.000Z",
      "arch": "x86_64",
      "commit": "7c939a2bfa7cd6add325467c9581ce27b15ebb39",
      "fileid": "https://r2.ropensci.org/f14c23fa1896081a61a42933f716db505097e60c12dd7e7c9e50ea8876c6ba43",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/r-forge/actions/runs/29182206834"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.3",
      "date": "2026-07-12T06:14:22.000Z",
      "arch": "emscripten",
      "commit": "7c939a2bfa7cd6add325467c9581ce27b15ebb39",
      "fileid": "https://r2.ropensci.org/6e4a944bfddc4df60fff5ee29cd84fc24bf96c3eb44e95f0bb520c667239fb98",
      "status": "success",
      "buildurl": "https://github.com/r-universe/r-forge/actions/runs/29182206834"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.3",
      "date": "2026-07-12T06:13:25.000Z",
      "arch": "x86_64",
      "commit": "7c939a2bfa7cd6add325467c9581ce27b15ebb39",
      "fileid": "https://r2.ropensci.org/11715e990b2d52aeca41b1d88c407b7ffbea579372f46f48745ac32198eef5b9",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/r-forge/actions/runs/29182206834"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.3",
      "date": "2026-07-12T06:13:53.000Z",
      "arch": "x86_64",
      "commit": "7c939a2bfa7cd6add325467c9581ce27b15ebb39",
      "fileid": "https://r2.ropensci.org/26c0fe66f41f1d690f31f6ff62e425350c41bf989f6e67bf73c4d8b02ee5a6bf",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/r-forge/actions/runs/29182206834"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.0.3",
      "date": "2026-07-12T06:13:42.000Z",
      "arch": "x86_64",
      "commit": "7c939a2bfa7cd6add325467c9581ce27b15ebb39",
      "fileid": "https://r2.ropensci.org/d05777ceb4edae200085558898514ae677f4283500b6b7f37b2fdea835144aec",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/r-forge/actions/runs/29182206834"
    }
  ]
}