{ "_id": "6a51da579b92047c28d51aec", "Package": "genoPlotR", "Type": "Package", "Title": "Plot Publication-Grade Gene and Genome Maps", "Version": "0.8.11", "Date": "2021-01-05", "Author": "Lionel Guy ", "URL": "http://genoplotr.r-forge.r-project.org/", "Maintainer": "Lionel Guy ", "Description": "Draws gene or genome maps and comparisons between these,\nin a publication-grade manner. Starting from simple, common\nfiles, it will draw postscript or PDF files that can be sent as\nsuch to journals.", "License": "GPL (>= 2)", "LazyLoad": "yes", "Repository": "https://r-forge.r-universe.dev", "Date/Publication": "2021-01-08 12:31:55 UTC", "RemoteUrl": "https://github.com/r-forge/genoplotr", "RemoteRef": "HEAD", "RemoteSha": "dc8e1d95b33f598cd0c9f9d0c299524e7b9f8792", "RemoteSubdir": "pkg", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-11 05:49:56 UTC", "User": "root" }, "_user": "r-forge", "_type": "src", "_file": "genoPlotR_0.8.11.tar.gz", "_fileid": "https://r2.ropensci.org/0c7fb2c1217d536548aa3b11a48e80dddd1f1c6152c5a1239e7a5facfda24acf", "_filesize": 1064894, "_sha256": "0c7fb2c1217d536548aa3b11a48e80dddd1f1c6152c5a1239e7a5facfda24acf", "_expires": "2026-10-19T05:53:25.000Z", "_created": "2026-07-11T05:49:56.000Z", "_published": "2026-07-11T05:53:27.183Z", "_jobs": [ { "job": 86516370609, "time": 172, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "8245417090" }, { "job": 86516370603, "time": 121, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "8245408763" }, { "job": 86516370612, "time": 85, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "8245403142" }, { "job": 86516370600, "time": 84, "config": "macos-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "8245403186" }, { "job": 86516157139, "time": 171, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8245390143" }, { "job": 86516370605, "time": 93, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8245404511" }, { "job": 86516370630, "time": 90, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "8245403961" }, { "job": 86516370607, "time": 64, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "8245400198" }, { "job": 86516370604, "time": 114, "config": "windows-release", "r": "4.6.1", "check": "NOTE", "artifact": "8245407656" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/r-forge/actions/runs/29141755911", "_status": "success", "_upstream": "https://github.com/r-forge/genoplotr", "_commit": { "id": "dc8e1d95b33f598cd0c9f9d0c299524e7b9f8792", "author": "lionelguy (Lionel Guy) ", "committer": "lionelguy (Lionel Guy) ", "message": "0.8.11: further modifications to avoid sending data.frames to sort().\n\ngit-svn-id: svn://svn.r-forge.r-project.org/svnroot/genoplotr@70 edb9625f-4e0d-4859-8d74-9fd3b1da38cb\n", "time": 1610109115 }, "_maintainer": { "name": "Lionel Guy", "email": "lionel.guy@imbim.uu.se", "login": "lguy", "orcid": "0000-0001-8354-2398", "twitter": "@LionelGuy", "description": "", "uuid": 841844 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10.0", "role": "Depends" }, { "package": "ade4", "role": "Depends" }, { "package": "grid", "role": "Depends" }, { "package": "methods", "role": "Imports" } ], "_owner": "r-forge", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "lguy", "count": 64, "uuid": 841844 }, { "user": "mocat2", "count": 5, "uuid": 19477820 }, { "user": "theussl", "count": 1, "uuid": 22165873 } ], "_userbio": { "uuid": 75573726, "type": "organization", "name": " R-Forge", "followers": 27, "description": "git-svn mirrors from R-Forge" }, "_downloads": { "count": 497, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/genoPlotR" }, "_mentions": 96, "_devurl": "https://github.com/r-forge/genoplotr", "_searchresults": 149, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/genoPlotR.html", "extra/NEWS.html", "extra/NEWS.txt", "manual.pdf" ], "_homeurl": "https://github.com/r-forge/genoplotr", "_realowner": "r-forge", "_cranurl": true, "_releases": [ { "version": "0.4", "date": "2010-05-19" }, { "version": "0.5", "date": "2010-06-24" }, { "version": "0.5.1", "date": "2010-08-16" }, { "version": "0.5.4", "date": "2010-09-22" }, { "version": "0.6", "date": "2011-03-24" }, { "version": "0.6.1", "date": "2011-03-31" }, { "version": "0.7", "date": "2011-05-03" }, { "version": "0.8", "date": "2012-06-25" }, { "version": "0.8.2", "date": "2013-12-23" }, { "version": "0.8.4", "date": "2015-07-08" }, { "version": "0.8.6", "date": "2017-05-16" }, { "version": "0.8.7", "date": "2017-11-06" }, { "version": "0.8.9", "date": "2019-01-25" }, { "version": "0.8.10", "date": "2020-12-10" }, { "version": "0.8.11", "date": "2021-01-07" } ], "_exports": [ "annotation", "apply_color_scheme", "artemisColors", "as.annotation", "as.comparison", "as.dna_seg", "as.seg_plot", "auto_annotate", "c.dna_seg", "comparison", "dna_seg", "gene_types", "human_nt", "is.annotation", "is.comparison", "is.dna_seg", "is.seg_plot", "middle", "plot_gene_map", "range.annotation", "range.comparison", "range.dna_seg", "read_comparison_from_blast", "read_comparison_from_tab", "read_dna_seg_from_embl", "read_dna_seg_from_fasta", "read_dna_seg_from_file", "read_dna_seg_from_genbank", "read_dna_seg_from_ptt", "read_dna_seg_from_tab", "read_mauve_backbone", "reverse", "seg_plot", "trim", "trim.seg_plot" ], "_datasets": [ { "name": "barto", "title": "Comparison of 4 Bartonella genomes", "object": "barto", "file": "barto.RData", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "bbone", "title": "Mauve backbone of 4 Bartonella genomes", "object": "mauve_bbone", "file": "mauve_bbone.RData", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "chrY_subseg", "title": "Comparisons of subsegments of the Y chromosome in human and chimp", "object": "chrY_subseg", "file": "chrY_subseg.RData", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "comparisons", "title": "Three genes data set", "object": "three_genes", "file": "three_genes.RData", "class": [ "list" ], "fields": [], "table": true, "tojson": true }, { "name": "dna_segs", "title": "Three genes data set", "object": "three_genes", "file": "three_genes.RData", "class": [ "list" ], "fields": [], "table": true, "tojson": true } ], "_help": [ { "page": "genoPlotR-package", "title": "Plot Publication-Grade Gene and Genome Maps", "topics": [ "genoPlotR-package", "genoPlotR" ] }, { "page": "annotation", "title": "Annotation class and class functions", "topics": [ "annotation", "as.annotation", "is.annotation" ] }, { "page": "apply_color_scheme", "title": "Apply a color scheme", "topics": [ "apply_color_scheme" ] }, { "page": "artemisColors", "title": "Artemis Colors", "topics": [ "artemisColors" ] }, { "page": "auto_annotate", "title": "Auto-annotate dna_segs", "topics": [ "auto_annotate" ] }, { "page": "barto", "title": "Comparison of 4 Bartonella genomes", "topics": [ "barto" ] }, { "page": "c.dna_seg", "title": "Concatenate dna_seg objects", "topics": [ "c.dna_seg" ] }, { "page": "chrY_subseg", "title": "Comparisons of subsegments of the Y chromosome in human and chimp", "topics": [ "chrY_subseg" ] }, { "page": "comparison", "title": "Comparison class and class functions", "topics": [ "as.comparison", "comparison", "is.comparison" ] }, { "page": "dna_seg", "title": "DNA segment (dna_seg) class and class functions", "topics": [ "as.dna_seg", "dna_seg", "is.dna_seg" ] }, { "page": "gene_types", "title": "Gene types", "topics": [ "gene_types" ] }, { "page": "human_nt", "title": "Human-readable nucleotide scale", "topics": [ "human_nt" ] }, { "page": "mauve_bbone", "title": "Mauve backbone of 4 Bartonella genomes", "topics": [ "bbone", "mauve_bbone" ] }, { "page": "middle", "title": "Middles of a dna_seg", "topics": [ "middle" ] }, { "page": "plot_gene_map", "title": "Plot gene and genome maps", "topics": [ "plot_gene_map" ] }, { "page": "range", "title": "Range calculation", "topics": [ "range.annotation", "range.comparison", "range.dna_seg" ] }, { "page": "read_functions", "title": "Reading functions", "topics": [ "read_comparison_from_blast", "read_comparison_from_tab", "read_dna_seg_from_embl", "read_dna_seg_from_fasta", "read_dna_seg_from_file", "read_dna_seg_from_genbank", "read_dna_seg_from_ptt", "read_dna_seg_from_tab", "read_functions", "read_mauve_backbone" ] }, { "page": "reverse", "title": "Reverse objects", "topics": [ "reverse", "reverse.comparison", "reverse.default", "reverse.dna_seg" ] }, { "page": "seg_plot", "title": "seg_plot class and class functions", "topics": [ "as.seg_plot", "is.seg_plot", "seg_plot" ] }, { "page": "three_genes", "title": "Three genes data set", "topics": [ "comparisons", "dna_segs", "three_genes" ] }, { "page": "trim", "title": "Trimming data frames or more complex objects with >= 2 numeric columns", "topics": [ "trim", "trim.annotation", "trim.comparison", "trim.default", "trim.dna_seg", "trim.seg_plot" ] } ], "_rundeps": [ "ade4", "lattice", "MASS", "pixmap", "Rcpp", "RcppArmadillo", "sp" ], "_vignettes": [ { "source": "genoPlotR.Rnw", "filename": "genoPlotR.pdf", "title": "Getting started with genoPlotR", "engine": "utils::Sweave", "headings": [], "created": "2013-12-18 15:40:03", "modified": "2020-12-10 12:11:15", "commits": 4 } ], "_score": 5.474216264076255, "_indexed": true, "_nocasepkg": "genoplotr", "_universes": [ "r-forge", "lguy" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.8.11", "date": "2026-07-11T05:52:41.000Z", "distro": "resolute", "commit": "dc8e1d95b33f598cd0c9f9d0c299524e7b9f8792", "fileid": "https://r2.ropensci.org/986718e7337bd576d85db495713eabf63137c91c4b3999ef81fec2d8d2935487", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/r-forge/actions/runs/29141755911" }, { "r": "4.6.1", "os": "linux", "version": "0.8.11", "date": "2026-07-11T05:51:51.000Z", "distro": "resolute", "commit": "dc8e1d95b33f598cd0c9f9d0c299524e7b9f8792", "fileid": "https://r2.ropensci.org/48233ac8747249332f95a91736a2b905abd2c0ae6db0084cc4ecb3168d828b05", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/r-forge/actions/runs/29141755911" }, { "r": "4.5.3", "os": "mac", "version": "0.8.11", "date": "2026-07-11T05:51:22.000Z", "commit": "dc8e1d95b33f598cd0c9f9d0c299524e7b9f8792", "fileid": "https://r2.ropensci.org/3ba8f7f16e488f55e8830f38107627790602f43d7488d052eac74a19208660ac", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/r-forge/actions/runs/29141755911" }, { "r": "4.6.1", "os": "mac", "version": "0.8.11", "date": "2026-07-11T05:51:21.000Z", "commit": "dc8e1d95b33f598cd0c9f9d0c299524e7b9f8792", "fileid": "https://r2.ropensci.org/509de507bb189db458a95e41bd66b2bebecf9376c2c6c8e10d37ff2f50a9a308", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/r-forge/actions/runs/29141755911" }, { "r": "4.6.0", "os": "wasm", "version": "0.8.11", "date": "2026-07-11T05:51:46.000Z", "commit": "dc8e1d95b33f598cd0c9f9d0c299524e7b9f8792", "fileid": "https://r2.ropensci.org/3c692e6af7aeaf46a7c3cd513b6d16820e6e74814e230ff6c2746fd4cb1c6cac", "status": "success", "buildurl": "https://github.com/r-universe/r-forge/actions/runs/29141755911" }, { "r": "4.7.0", "os": "win", "version": "0.8.11", "date": "2026-07-11T05:51:01.000Z", "commit": "dc8e1d95b33f598cd0c9f9d0c299524e7b9f8792", "fileid": "https://r2.ropensci.org/04af8ab582ad2308c3270df4cf923d34609fb97bd73f433de35f4cdd18dd8f16", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/r-forge/actions/runs/29141755911" }, { "r": "4.5.3", "os": "win", "version": "0.8.11", "date": "2026-07-11T05:50:57.000Z", "commit": "dc8e1d95b33f598cd0c9f9d0c299524e7b9f8792", "fileid": "https://r2.ropensci.org/a5d270cbe0724b2c5d910a6287f2df1dd550fa26210db9f563aa32e7338761f4", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/r-forge/actions/runs/29141755911" }, { "r": "4.6.1", "os": "win", "version": "0.8.11", "date": "2026-07-11T05:51:38.000Z", "commit": "dc8e1d95b33f598cd0c9f9d0c299524e7b9f8792", "fileid": "https://r2.ropensci.org/ac705806b889f138b9d7b4534669d3ff61b89f668be383a69234924a9105660a", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/r-forge/actions/runs/29141755911" } ] }