{
  "_id": "6a0f5c97acfb0bcc41c5979b",
  "Package": "mada",
  "Type": "Package",
  "Title": "Meta-Analysis of Diagnostic Accuracy",
  "Version": "0.5.12",
  "Date": "2025-05-06",
  "Authors@R": "c(person(\"Philipp\", \"Doebler\", role = c(\"aut\", \"cre\"),\nemail = \"philipp.doebler@googlemail.com\",\ncomment = c(ORCID = \"0000-0002-2946-8526\")),\nperson(\"Bernado\", \"Sousa-Pinto\", role = \"ctb\",\nemail = \"bernardo@med.up.pt\",\ncomment = c(ORCID = \"0000-0002-1277-3401\")))",
  "Description": "Provides functions for diagnostic meta-analysis. Next to\nbasic analysis and visualization the bivariate Model of Reitsma\net al. (2005) that is equivalent to the HSROC of Rutter &\nGatsonis (2001) can be fitted. A new approach based to\ndiagnostic meta-analysis of Holling et al. (2012) is also\navailable. Standard methods like summary, plot and so on are\nprovided.",
  "License": "GPL-2",
  "URL": "https://r-forge.r-project.org/projects/mada/",
  "Encoding": "UTF-8",
  "Repository": "https://r-forge.r-universe.dev",
  "Date/Publication": "2025-05-06 07:21:18 UTC",
  "RemoteUrl": "https://github.com/r-forge/mada",
  "RemoteRef": "HEAD",
  "RemoteSha": "5c98495b8c4b0c382cd2a2b8dce17e18c067042b",
  "RemoteSubdir": "pkg",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-21 17:01:24 UTC",
    "User": "root"
  },
  "Author": "Philipp Doebler [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-2946-8526>),\nBernado Sousa-Pinto [ctb] (ORCID:\n<https://orcid.org/0000-0002-1277-3401>)",
  "Maintainer": "Philipp Doebler <philipp.doebler@googlemail.com>",
  "MD5sum": "3f6be89a0a13559c54d8fb03914b9010",
  "_user": "r-forge",
  "_type": "src",
  "_file": "mada_0.5.12.tar.gz",
  "_fileid": "054d3a4925d87d0e4ceeb956f5ee8fe7b9347a78b45b5d08c4de800ede3b17c0",
  "_filesize": 878808,
  "_sha256": "054d3a4925d87d0e4ceeb956f5ee8fe7b9347a78b45b5d08c4de800ede3b17c0",
  "_created": "2026-05-21T17:01:24.000Z",
  "_published": "2026-05-21T19:27:19.405Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77251766049,
      "time": 129,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7142218365"
    },
    {
      "job": 77251766464,
      "time": 134,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7142219699"
    },
    {
      "job": 77251766100,
      "time": 102,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7142207167"
    },
    {
      "job": 77251766021,
      "time": 107,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7142209708"
    },
    {
      "job": 77251764826,
      "time": 163,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7142169076"
    },
    {
      "job": 77251765360,
      "time": 103,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7145223758"
    },
    {
      "job": 77251766390,
      "time": 97,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7142205752"
    },
    {
      "job": 77251766309,
      "time": 96,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7142205453"
    },
    {
      "job": 77251766258,
      "time": 108,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7142210252"
    }
  ],
  "_buildurl": "https://github.com/r-universe/r-forge/actions/runs/26240636033",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/r-forge/mada",
  "_commit": {
    "id": "5c98495b8c4b0c382cd2a2b8dce17e18c067042b",
    "author": "doebler (Prof. Dr. ) <philipp.doebler@googlemail.com>",
    "committer": "doebler (Prof. Dr. ) <philipp.doebler@googlemail.com>",
    "message": "added Encoding to DESCRIPTION. Umlaut in Rd files now in UTF-8.\n\ngit-svn-id: svn://svn.r-forge.r-project.org/svnroot/mada@114 edb9625f-4e0d-4859-8d74-9fd3b1da38cb\n",
    "time": 1746516078
  },
  "_maintainer": {
    "name": "Philipp Doebler",
    "email": "philipp.doebler@googlemail.com",
    "login": "doebler",
    "description": "",
    "uuid": 52652227,
    "orcid": "0000-0002-2946-8526"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Depends"
    },
    {
      "package": "mvtnorm",
      "role": "Depends"
    },
    {
      "package": "ellipse",
      "role": "Depends"
    },
    {
      "package": "mvmeta",
      "role": "Depends"
    },
    {
      "package": "metafor",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Imports"
    }
  ],
  "_owner": "r-forge",
  "_selfowned": true,
  "_usedby": 3,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "doebler",
      "count": 95,
      "uuid": 52652227
    },
    {
      "user": "theussl",
      "count": 1,
      "uuid": 22165873
    }
  ],
  "_userbio": {
    "uuid": 75573726,
    "type": "organization",
    "name": " R-Forge",
    "description": "git-svn mirrors from R-Forge"
  },
  "_downloads": {
    "count": 5150,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/mada"
  },
  "_mentions": 78,
  "_devurl": "https://github.com/r-forge/mada",
  "_searchresults": 93,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/mada.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/r-forge/mada",
  "_realowner": "r-forge",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.4",
      "date": "2012-05-26"
    },
    {
      "version": "0.4.1",
      "date": "2012-06-02"
    },
    {
      "version": "0.5.0",
      "date": "2012-11-14"
    },
    {
      "version": "0.5.1",
      "date": "2012-11-19"
    },
    {
      "version": "0.5.4",
      "date": "2013-03-07"
    },
    {
      "version": "0.5.5",
      "date": "2014-01-01"
    },
    {
      "version": "0.5.6",
      "date": "2014-07-23"
    },
    {
      "version": "0.5.7",
      "date": "2015-02-05"
    },
    {
      "version": "0.5.8",
      "date": "2017-10-09"
    },
    {
      "version": "0.5.9",
      "date": "2019-09-27"
    },
    {
      "version": "0.5.10",
      "date": "2020-05-25"
    },
    {
      "version": "0.5.11",
      "date": "2022-07-15"
    },
    {
      "version": "0.5.12",
      "date": "2025-05-06"
    }
  ],
  "_exports": [
    "AUC",
    "CIrho",
    "cochran.Q",
    "crosshair",
    "forest",
    "forestmada",
    "fpr",
    "madad",
    "madauni",
    "mcsroc",
    "mslSROC",
    "phm",
    "predv_d",
    "predv_r",
    "print.madad",
    "print.madauni",
    "print.predv_d",
    "print.predv_r",
    "print.summary.madauni",
    "reitsma",
    "ROCellipse",
    "rsSROC",
    "sens",
    "spec",
    "sroc",
    "summary.madauni",
    "summary.predv_d",
    "summary.predv_r",
    "SummaryPts",
    "talpha",
    "vcov.madauni"
  ],
  "_datasets": [
    {
      "name": "AuditC",
      "title": "Diagnostic accuracy data",
      "object": "AuditC",
      "file": "AuditC.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "TP",
        "FN",
        "FP",
        "TN"
      ],
      "rows": 14,
      "table": true,
      "tojson": true
    },
    {
      "name": "Dementia",
      "title": "Diagnostic accuracy data",
      "object": "Dementia",
      "file": "Dementia.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "TP",
        "FN",
        "FP",
        "TN"
      ],
      "rows": 33,
      "table": true,
      "tojson": true
    },
    {
      "name": "IAQ",
      "title": "Diagnostic accuracy data",
      "object": "IAQ",
      "file": "IAQ.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "author",
        "study_id",
        "result_id",
        "type",
        "TP",
        "FN",
        "FP",
        "TN",
        "population"
      ],
      "rows": 20,
      "table": true,
      "tojson": true
    },
    {
      "name": "SAQ",
      "title": "Diagnostic accuracy data",
      "object": "SAQ",
      "file": "SAQ.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "author",
        "study_id",
        "result_id",
        "type",
        "TP",
        "FN",
        "FP",
        "TN",
        "population"
      ],
      "rows": 31,
      "table": true,
      "tojson": true
    },
    {
      "name": "skin_tests",
      "title": "Diagnostic accuracy data",
      "object": "skin_tests",
      "file": "skin_tests.rda",
      "class": [
        "spec_tbl_df",
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "TP",
        "FP",
        "TN",
        "FN"
      ],
      "rows": 10,
      "table": true,
      "tojson": true
    },
    {
      "name": "smoking",
      "title": "Diagnostic accuracy data",
      "object": "smoking",
      "file": "smoking.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "author",
        "study_id",
        "result_id",
        "type",
        "TP",
        "FN",
        "FP",
        "TN",
        "population"
      ],
      "rows": 51,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "mada-package",
      "title": "Meta-Analysis of diagnostic accuracy studies mada",
      "topics": [
        "mada-package",
        "mada"
      ]
    },
    {
      "page": "AUC",
      "title": "Area under the curve (AUC)",
      "topics": [
        "AUC",
        "auc",
        "AUC.default",
        "AUC.phm",
        "AUC.reitsma"
      ]
    },
    {
      "page": "CIrho",
      "title": "Confidence intervals for Spearman's rho.",
      "concept": [
        "confidence interval",
        "Spearman's rho"
      ],
      "topics": [
        "CIrho"
      ]
    },
    {
      "page": "cochran.Q",
      "title": "Cochran's Q statistic",
      "topics": [
        "cochran.Q"
      ]
    },
    {
      "page": "crosshair",
      "title": "Crosshair plot",
      "topics": [
        "crosshair",
        "crosshair.default"
      ]
    },
    {
      "page": "forest",
      "title": "Forest plot for univariate measures",
      "topics": [
        "forest",
        "forest.madad",
        "forest.madauni",
        "forestmada"
      ]
    },
    {
      "page": "mada-data",
      "title": "Diagnostic accuracy data",
      "topics": [
        "AuditC",
        "Dementia",
        "IAQ",
        "mada-data",
        "SAQ",
        "skin_tests",
        "smoking"
      ]
    },
    {
      "page": "madad",
      "title": "Descriptive statistics for meta-analysis of diagnostic accuracy",
      "concept": [
        "diagnostic meta-analysis",
        "meta-analysis",
        "descriptive statistics"
      ],
      "topics": [
        "madad",
        "madad-class",
        "print.madad"
      ]
    },
    {
      "page": "madauni",
      "title": "Meta-Analyisis of univariate measures of diagnostic accuracy",
      "concept": [
        "meta-analysis",
        "diagnostic meta-analysis",
        "random effects model",
        "Mantel-Haenszel estimation"
      ],
      "topics": [
        "madauni"
      ]
    },
    {
      "page": "madauni-class",
      "title": "Methods for the class 'madauni'.",
      "topics": [
        "madauni-class",
        "print.madauni",
        "print.summary.madauni",
        "summary.madauni",
        "summary.madauni-class",
        "vcov.madauni"
      ]
    },
    {
      "page": "mslSROC",
      "title": "Plot the Moses-Shapiro-Littenberg SROC curve",
      "concept": [
        "diagnostic meta-analysis",
        "meta-analysis",
        "SROC curve"
      ],
      "topics": [
        "mslSROC"
      ]
    },
    {
      "page": "phm",
      "title": "Diagnostic Meta-Analysis with the proportional hazards model approach of Holling et.al (2012)",
      "concept": [
        "proportional hazards model",
        "random effects model",
        "diagnostic meta-analysis",
        "meta-analysis",
        "SROC curve"
      ],
      "topics": [
        "phm",
        "phm.default"
      ]
    },
    {
      "page": "phm-class",
      "title": "Methods for 'phm' objects.",
      "concept": [
        "random effects model",
        "SROC curve",
        "ROC space",
        "diagnostic meta-analysis",
        "meta-analysis"
      ],
      "topics": [
        "phm-class",
        "plot.phm",
        "print.phm",
        "sroc.phm",
        "summary.phm"
      ]
    },
    {
      "page": "predv_d",
      "title": "Estimation of Distributions of Predictive Values Based on Prevalence Probability Distributions and Pooled Sensitivities and Specificities",
      "topics": [
        "predv_d"
      ]
    },
    {
      "page": "predv_d-class",
      "title": "Methods for the class 'predv_d'.",
      "topics": [
        "predv_d-class",
        "print.predv_d",
        "summary.predv_d",
        "summary.predv_d-class"
      ]
    },
    {
      "page": "predv_r",
      "title": "Estimation of Distributions of Predictive Values Based on Prevalence Ranges and Pooled Sensitivities and Specificities",
      "concept": [
        "predictive values",
        "diagnostic meta-analysis",
        "meta-analysis"
      ],
      "topics": [
        "predv_r"
      ]
    },
    {
      "page": "predv_r-class",
      "title": "Methods for the class 'predv_r'.",
      "topics": [
        "predv_r-class",
        "print.predv_r",
        "summary.predv_r",
        "summary.predv_r-class"
      ]
    },
    {
      "page": "reitsma",
      "title": "Fit the bivariate model of Reitsma et al. (2005) and extensions.",
      "concept": [
        "random effects model",
        "diagnostic meta-analysis",
        "meta-analysis"
      ],
      "topics": [
        "reitsma",
        "reitsma.default"
      ]
    },
    {
      "page": "reitsma-class",
      "title": "Methods for 'reitsma' objects.",
      "concept": [
        "random effects model",
        "SROC curve",
        "ROC space",
        "diagnostic meta-analysis",
        "meta-analysis"
      ],
      "topics": [
        "anova.reitsma",
        "crosshair.reitsma",
        "mcsroc",
        "mcsroc.reitsma",
        "plot.reitsma",
        "print.anova.reitsma",
        "print.reitsma",
        "reitsma-class",
        "ROCellipse.reitsma",
        "sroc",
        "sroc.reitsma",
        "summary.reitsma"
      ]
    },
    {
      "page": "ROCellipse",
      "title": "Confidence Regions on ROC space",
      "topics": [
        "ROCellipse",
        "ROCellipse.default"
      ]
    },
    {
      "page": "rsSROC",
      "title": "Plot the Ruecker-Schumacher (2010) SROC curve",
      "concept": [
        "diagnostic meta-analysis",
        "meta-analysis",
        "SROC curve"
      ],
      "topics": [
        "rsSROC"
      ]
    },
    {
      "page": "sens",
      "title": "Sensitivity, Specificity and False Positive Rate",
      "topics": [
        "fpr",
        "sens",
        "spec"
      ]
    },
    {
      "page": "SummaryPts",
      "title": "Use the Zwindermann & Bossuyt (2008) MCMC procedure to generate summary points (positive and negative likelihood ratio, diagnostic odds ratio) for the Reitsma et al. (2005) bivariate model",
      "concept": [
        "MCMC"
      ],
      "topics": [
        "print.SummaryPts",
        "summary.SummaryPts",
        "SummaryPts",
        "SummaryPts.default",
        "SummaryPts.reitsma"
      ]
    },
    {
      "page": "talpha",
      "title": "The t_alpha transformation as a link function for binary GLMs.",
      "concept": [
        "transformation",
        "link function"
      ],
      "topics": [
        "talpha"
      ]
    }
  ],
  "_rundeps": [
    "digest",
    "ellipse",
    "lattice",
    "mathjaxr",
    "Matrix",
    "metadat",
    "metafor",
    "mixmeta",
    "mvmeta",
    "mvtnorm",
    "nlme",
    "numDeriv",
    "pbapply"
  ],
  "_vignettes": [
    {
      "source": "mada.Rnw",
      "filename": "mada.pdf",
      "title": "Meta-Analysis of Diagnostic Accuracy with mada",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2013-12-11 10:49:43",
      "modified": "2022-07-11 20:02:08",
      "commits": 10
    }
  ],
  "_score": 6.634532687034451,
  "_indexed": true,
  "_nocasepkg": "mada",
  "_universes": [
    "r-forge",
    "doebler"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.5.12",
      "date": "2026-05-21T17:03:22.000Z",
      "distro": "noble",
      "commit": "5c98495b8c4b0c382cd2a2b8dce17e18c067042b",
      "fileid": "3e5e5c43ec91f9a05f78efbd15dcab765ebb44d28af7ee6fe6593a5a45310c89",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/r-forge/actions/runs/26240636033"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.5.12",
      "date": "2026-05-21T17:03:26.000Z",
      "distro": "noble",
      "commit": "5c98495b8c4b0c382cd2a2b8dce17e18c067042b",
      "fileid": "b46eda6bc1e99d005849b44b569c2354165acd64525459fbcb949573ff5c45ec",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/r-forge/actions/runs/26240636033"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.5.12",
      "date": "2026-05-21T17:03:02.000Z",
      "commit": "5c98495b8c4b0c382cd2a2b8dce17e18c067042b",
      "fileid": "210a4a8a3caa0479fb542942805090fad2a322b5d62159daf06ce7672e815df3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/r-forge/actions/runs/26240636033"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.5.12",
      "date": "2026-05-21T17:03:06.000Z",
      "commit": "5c98495b8c4b0c382cd2a2b8dce17e18c067042b",
      "fileid": "c5da4783c7ab00bc55c256928a59cb342da8174c0263c8326947d25eb487276a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/r-forge/actions/runs/26240636033"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.5.12",
      "date": "2026-05-21T19:26:54.000Z",
      "commit": "5c98495b8c4b0c382cd2a2b8dce17e18c067042b",
      "fileid": "7b8edc6b84c7a0ed0dfcd9a27030ba65b7896e2075e6a444267019df9974535a",
      "status": "success",
      "buildurl": "https://github.com/r-universe/r-forge/actions/runs/26240636033"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.5.12",
      "date": "2026-05-21T17:02:43.000Z",
      "commit": "5c98495b8c4b0c382cd2a2b8dce17e18c067042b",
      "fileid": "a30e30ac8283237aaa4c974c3cc97f599178364a50c77b94f7907fc09e40ecf6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/r-forge/actions/runs/26240636033"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.5.12",
      "date": "2026-05-21T17:02:42.000Z",
      "commit": "5c98495b8c4b0c382cd2a2b8dce17e18c067042b",
      "fileid": "d876052888ad37d489e222370c7f95afdb8edd53677262ae317da82c3be911a9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/r-forge/actions/runs/26240636033"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.5.12",
      "date": "2026-05-21T17:02:54.000Z",
      "commit": "5c98495b8c4b0c382cd2a2b8dce17e18c067042b",
      "fileid": "8c7d4de4ccb54ce80fa1853a1a1cf2ad536162999cdc4ee2fd458af8b2aa86a4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/r-forge/actions/runs/26240636033"
    }
  ]
}