Package: ClassComparison 3.3.2

Kevin R. Coombes

ClassComparison: Classes and Methods for "Class Comparison" Problems on Microarrays

Defines the classes used for "class comparison" problems in the OOMPA project (<http://oompa.r-forge.r-project.org/>). Class comparison includes tests for differential expression; see Simon's book for details on typical problem types.

Authors:Kevin R. Coombes [aut, cre]

ClassComparison_3.3.2.tar.gz
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ClassComparison.pdf |ClassComparison.html✨
ClassComparison/json (API)
NEWS

# Install 'ClassComparison' in R:
install.packages('ClassComparison', repos = c('https://r-forge.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://r-forge.r-project.org/projects/oompa

On CRAN:

microarraydifferentialexpressionmultiplecomparisons

6.52 score 3 packages 44 scripts 341 downloads 2 mentions 28 exports 5 dependencies

Last updated 2 months agofrom:ff29702983. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 16 2024
R-4.5-winOKNov 16 2024
R-4.5-linuxOKNov 16 2024
R-4.4-winOKNov 16 2024
R-4.4-macOKNov 16 2024
R-4.3-winOKNov 16 2024
R-4.3-macOKNov 16 2024

Exports:anovaas.data.frameBumcountSignificantcutoffSignificantDudoitdwilhistimagelikelihoodBumMultiLinearModelMultiTtestMultiTtestPairedMultiTtestUnequalmultiTukeyMultiWilcoxonTestplotprobDiffrankSumSamselectSignificantshowSingleGroupSmoothTtestsummaryTNoMTwoGroupStatsupdate

Dependencies:BiobaseBiocGenericsclustergenericsoompaBase

OOMPA ClassComparison

Rendered fromoompa-cc.Rnwusingutils::Sweaveon Nov 16 2024.

Last update: 2014-05-05
Started: 2014-02-10

Readme and manuals

Help Manual

Help pageTopics
Class "Bum"Bum Bum-class countSignificant,Bum-method cutoffSignificant,Bum-method hist,Bum-method image,Bum-method likelihoodBum selectSignificant,Bum-method summary,Bum-method
Class "BumSummary"BumSummary BumSummary-class show,BumSummary-method
Class "Dudoit"countSignificant,Dudoit-method cutoffSignificant,Dudoit-method Dudoit Dudoit-class plot,Dudoit,missing-method selectSignificant,Dudoit-method
Wilcoxon Density Functiondwil
Class "MultiLinearModel"anova,MultiLinearModel-method as.data.frame,MultiLinearModel-method hist,MultiLinearModel-method MultiLinearModel MultiLinearModel-class multiTukey plot,MultiLinearModel,ANY-method plot,MultiLinearModel,missing-method summary,MultiLinearModel-method
Class "MultiTtest"as.data.frame,MultiTtest-method hist,MultiTtest-method MultiTtest MultiTtest-class plot,MultiTtest,ANY-method plot,MultiTtest,missing-method summary,MultiTtest-method
Class "MultiWilcoxonTest"countSignificant,MultiWilcoxonTest-method cutoffSignificant,MultiWilcoxonTest-method hist,MultiWilcoxonTest-method MultiWilcoxonTest MultiWilcoxonTest-class plot,MultiWilcoxonTest,missing-method probDiff,MultiWilcoxonTest-method selectSignificant,MultiWilcoxonTest-method summary,MultiWilcoxonTest-method
Wilcoxon Rank-Sum StatisticrankSum
Class "Sam"countSignificant,Sam-method plot,Sam,missing-method Sam Sam-class selectSignificant,Sam-method summary,Sam-method
Class "SamSummary"SamSummary SamSummary-class show,SamSummary-method
Generic Methods for SignificancecountSignificant countSignificant,ANY-method countSignificant-method cutoffSignificant cutoffSignificant,ANY-method cutoffSignificant-method probDiff probDiff,ANY-method probDiff-method selectSignificant selectSignificant,ANY-method selectSignificant-method
Class "SingleGroup"as.data.frame,SingleGroup-method plot,SingleGroup,missing-method print,SingleGroup-method show,SingleGroup-method SingleGroup SingleGroup-class summary,SingleGroup-method
Class "SmoothTtest"as.data.frame,SmoothTtest-method plot,SmoothTtest,missing-method SmoothTtest SmoothTtest-class summary,SmoothTtest-method
Classes "TNoM" and "fullTNoM"countSignificant,TNoM-method fullTNoM-class hist,fullTNoM-method plot,fullTNoM,missing-method selectSignificant,TNoM-method summary,TNoM-method TNoM TNoM-class update,TNoM-method
Class "TNoMSummary"show,TNoMSummary-method TNoMSummary TNoMSummary-class
Class "TwoGroupStats"as.data.frame,TwoGroupStats-method plot,TwoGroupStats,missing-method print,TwoGroupStats-method show,TwoGroupStats-method summary,TwoGroupStats-method TwoGroupStats TwoGroupStats-class
Classes for Variant T-testsMultiTtestPaired MultiTtestPaired-class MultiTtestUnequal MultiTtestUnequal-class summary,MultiTtestPaired-method summary,MultiTtestUnequal-method