Package: RHRV 5.0.0

Leandro Rodriguez-Linares

RHRV: Heart Rate Variability Analysis of ECG Data

Allows users to import data files containing heartbeat positions in the most broadly used formats, to remove outliers or points with unacceptable physiological values present in the time series, to plot HRV data, and to perform time domain, frequency domain and nonlinear HRV analysis. See Garcia et al. (2017) <doi:10.1007/978-3-319-65355-6>.

Authors:Leandro Rodriguez-Linares [aut, cre], Xose Vila [aut], Maria Jose Lado [aut], Arturo Mendez [aut], Abraham Otero [aut], Constantino Antonio Garcia [aut], Matti Lassila [ctb]

RHRV_5.0.0.tar.gz
RHRV_5.0.0.zip(r-4.7-x86_64)RHRV_5.0.0.zip(r-4.7-arm64)RHRV_5.0.0.zip(r-4.6-x86_64)RHRV_5.0.0.zip(r-4.6-arm64)RHRV_5.0.0.zip(r-4.5-x86_64)
RHRV_5.0.0.tgz(r-4.6-x86_64)RHRV_5.0.0.tgz(r-4.6-arm64)RHRV_5.0.0.tgz(r-4.5-x86_64)RHRV_5.0.0.tgz(r-4.5-arm64)
RHRV_5.0.0.tar.gz(r-4.7-arm64)RHRV_5.0.0.tar.gz(r-4.7-x86_64)RHRV_5.0.0.tar.gz(r-4.6-arm64)RHRV_5.0.0.tar.gz(r-4.6-x86_64)
RHRV_5.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
RHRV/json (API)

# Install 'RHRV' in R:

install.packages('RHRV', repos = c('https://r-forge.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://r-forge.r-project.org/projects/rhrv

Datasets:

HRVData - HRVData
HRVProcessedData - HRVProcessedData

On CRAN:

6.26 score 1 packages 76 scripts 692 downloads 20 mentions 80 exports 99 dependencies

Last updated from:d1132513cd. Checks:15 OK. Indexed: yes.

Target	Result	Time
linux-devel-arm64	OK	185
linux-devel-x86_64	OK	216
source / vignettes	OK	314
linux-release-arm64	OK	208
linux-release-x86_64	OK	208
macos-release-arm64	OK	173
macos-release-x86_64	OK	375
macos-oldrel-arm64	OK	219
macos-oldrel-x86_64	OK	215
windows-devel-arm64	OK	236
windows-devel-x86_64	OK	163
windows-release-arm64	OK	270
windows-release-x86_64	OK	135
windows-oldrel-x86_64	OK	150
wasm-release	OK	144

Exports:AddEpisodes AnalyzeHRbyEpisodes AnalyzePowerBandsByEpisodes AvgIntegralCorrelation BuildNIHR BuildTakens BuildTakensVector CalculateApEn CalculateCorrDim CalculateDFA CalculateEmbeddingDim CalculateEnergyInPSDBands CalculateFracDim CalculateInfDim CalculateMaxLyapunov CalculatePowerBand CalculatePSD CalculateRfromCorrelation CalculateSampleEntropy CalculateSpectrogram CalculateTimeLag CreateFreqAnalysis CreateHRVData CreateNonLinearAnalysis CreateTimeAnalysis EditNIHR EstimateCorrDim EstimateDFA EstimateInfDim EstimateMaxLyapunov EstimatePSDSlope EstimateSampleEntropy ExtractTimeSegment FilterNIHR GenerateEpisodes getNormSpectralUnits IntegralCorrelation InterpolateNIHR ListEpisodes LoadApneaWFDB LoadBeat LoadBeatAmbit LoadBeatAscii LoadBeatEDFPlus LoadBeatPolar LoadBeatRR LoadBeatSuunto LoadBeatVector LoadBeatWFDB LoadEpisodesAscii LoadHeaderWFDB ModifyEpisodes NonlinearityTests NonLinearNoiseReduction OverplotEpisodes PlotCorrDim PlotDFA PlotHR PlotInfDim PlotMaxLyapunov PlotNIHR PlotPowerBand PlotPSD PlotSampleEntropy PlotSinglePowerBand PlotSpectrogram PoincarePlot ReadFromFile RecurrencePlot RemoveEpisodes RHRVEasy RHRVEasyStats RQA SaveHRVIndices SetVerbose SplitHRbyEpisodes SplitPowerBandByEpisodes SurrogateTest Window WriteToFile

Dependencies:askpass backports base64enc boot broom bslib BWStest cachem cli codetools cpp11 crosstalk curl data.table digest doParallel dplyr evaluate farver fastmap fontawesome foreach fs generics ggplot2 glue gmp gridExtra gtable highr htmltools htmlwidgets httr isoband iterators jquerylib jsonlite knitr kSamples labeling later lattice lazyeval lifecycle lomb magrittr MASS Matrix memoise mime multcompView multitaper mvtnorm nlme nonlinearTseries openssl otel pillar pkgconfig plotly plotrix PMCMRplus pracma promises purrr quadprog quantmod R6 rappdirs RColorBrewer Rcpp RcppArmadillo rlang rmarkdown Rmpfr S7 sass scales segmented stringi stringr SuppDists sys tibble tidyr tidyselect tinytex tseries TTR utf8 vctrs viridisLite waveslim withr writexl xfun xts yaml zoo

Automating HRV analysis: RHRVEasy

Rendered fromRHRVEasy.Rmdusingknitr::rmarkdown

Last update: 2024-05-16
Started: 2024-05-15

RHRV Quick Start Tutorial

Rendered fromRHRV-quickstart.Rmdusingknitr::rmarkdown

Last update: 2017-02-09
Started: 2017-02-08

Help page	Topics
RHRV: An R-based software package for the heart rate variability analysis of ECG recordings	RHRV-package RHRV
Adds new episodes manually	AddEpisodes
Analyzes Heart Rate using episodes information	AnalyzeHRbyEpisodes
Analyze power band by episodes	AnalyzePowerBandsByEpisodes
Calculates the average of the Integral Correlations	AvgIntegralCorrelation
Builds the instantaneous heart rate signal from a beat position array	BuildNIHR
Build the Takens' vectors	BuildTakens
Calculates Takens expanded vectors	BuildTakensVector
Calculates Approximate Entropy	CalculateApEn
Correlation sum, correlation dimension and generalized correlation dimension (order q >1)	CalculateCorrDim EstimateCorrDim PlotCorrDim
Detrended Fluctuation Analysis	CalculateDFA EstimateDFA PlotDFA
Estimate the proper embedding dimension for the RR time series	CalculateEmbeddingDim
CalculateSPDBandsEnergy	CalculateEnergyInPSDBands
Calculates Fractal Dimension	CalculateFracDim
Information dimension of the RR time series	CalculateInfDim EstimateInfDim PlotInfDim
Maximum lyapunov exponent	CalculateMaxLyapunov EstimateMaxLyapunov PlotMaxLyapunov
Calculates power per band	CalculatePowerBand
Spectral Density Estimation	CalculatePSD
Calculates ra and rb from Correlation	CalculateRfromCorrelation
Sample Entropy (also known as Kolgomorov-Sinai Entropy)	CalculateSampleEntropy EstimateSampleEntropy PlotSampleEntropy
Calculates the spectrogram of a signal	CalculateSpectrogram
Estimate an appropiate time lag for the Takens' vectors	CalculateTimeLag
Creates data analysis structure for frequency analysis calculations	CreateFreqAnalysis
Creates data structure for all the calculations	CreateHRVData
Creates data analysis structure for non linear analysis calculations	CreateNonLinearAnalysis
Creates data analysis structure for time analysis calculations	CreateTimeAnalysis
Manually edition of non-interpolated instantaneous heart rate	EditNIHR
Estimate the slope of the Power Spectral Density (PSD).	EstimatePSDSlope
Time windows of HR record	ExtractTimeSegment
Artefact filter based in an adaptive threshold	FilterNIHR
Creates new episodes from old ones	GenerateEpisodes
Normalized Spectral Units	getNormSpectralUnits
HRVData	HRVData
HRVProcessedData	HRVProcessedData
Calculates the Integral Correlation	IntegralCorrelation
Linear or Spline interpolator for build the sample heart rate signal	InterpolateNIHR
Episodes listing	ListEpisodes
Loads apnea episodes for WFDB record	LoadApneaWFDB
Builds an array of beats positions from different type of files	LoadBeat
Imports data from a record in Suunto Ambit XML format	LoadBeatAmbit
Builds an array of beats positions from an ascii file	LoadBeatAscii
Imports data from a record in EDF+ format	LoadBeatEDFPlus
Imports data from a record in Polar format	LoadBeatPolar
Builds an array of beats positions from an ascii file	LoadBeatRR
Imports data from a record in Suunto format	LoadBeatSuunto
Loads beats positions from an R vector	LoadBeatVector
Imports data from a record in WFDB format	LoadBeatWFDB
Loads episodes file	LoadEpisodesAscii
Imports header information from a record in wfdb format	LoadHeaderWFDB
Modifies values of episodes	ModifyEpisodes
Nonlinearity tests	NonlinearityTests
Nonlinear noise reduction	NonLinearNoiseReduction
OverplotEpisodes	OverplotEpisodes
Simple plot of interpolated heart rate	PlotHR
Simple plot of non-interpolated heart rate	PlotNIHR
Plots power determined by CalculatePowerBand function	PlotPowerBand
Plot Spectral Density Estimation	PlotPSD
PlotSinglePowerBand	PlotSinglePowerBand
Calculates and Plots spectrogram	PlotSpectrogram
Poincare Plot	PoincarePlot
Reads data structure from file	ReadFromFile
Recurrence Plot	RecurrencePlot
Remove episodes by indexes or tags	RemoveEpisodes
Run a full HRV analysis including indices computation and statistical analysis	RHRVEasy
Rerun the statistical analysis from a previous `RHRVEasy()` call	RHRVEasyStats
Recurrence Quantification Analysis (RQA)	RQA
Save the HRV indices as an excel file	SaveHRVIndices
Sets verbose mode on or off	SetVerbose
Splits Heart Rate Data using Episodes information	SplitHRbyEpisodes
Splits Power Per Band using Episodes information	SplitPowerBandByEpisodes
Surrogate data testing	SurrogateTest
Time windows of RR intervals	Window
Writes data structure to a file	WriteToFile

Package: RHRV 5.0.0

RHRV: Heart Rate Variability Analysis of ECG Data

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Help Manual

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