Package: coin 1.4-4

Torsten Hothorn

coin: Conditional Inference Procedures in a Permutation Test Framework

Conditional inference procedures for the general independence problem including two-sample, K-sample (non-parametric ANOVA), correlation, censored, ordered and multivariate problems described in <doi:10.18637/jss.v028.i08>.

Authors:Torsten Hothorn [aut, cre], Henric Winell [aut], Kurt Hornik [aut], Mark A. van de Wiel [aut], Achim Zeileis [aut]

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manual.pdf |manual.html✨
card.svg |card.png
coin/json (API)
NEWS

# Install 'coin' in R:
install.packages('coin', repos = c('https://r-forge.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://r-forge.r-project.org/projects/coin

Datasets:
  • alpha - Genetic Components of Alcoholism
  • alzheimer - Smoking and Alzheimer's Disease
  • asat - Toxicological Study on Female Wistar Rats
  • CWD - Coarse Woody Debris
  • glioma - Malignant Glioma Pilot Study
  • GTSG - Gastrointestinal Tumor Study Group
  • hohnloser - Left Ventricular Ejection Fraction
  • jobsatisfaction - Income and Job Satisfaction
  • malformations - Maternal Drinking and Congenital Sex Organ Malformation
  • mercuryfish - Chromosomal Effects of Mercury-Contaminated Fish Consumption
  • neuropathy - Acute Painful Diabetic Neuropathy
  • ocarcinoma - Ovarian Carcinoma
  • photocar - Multiple Dosing Photococarcinogenicity Experiment
  • rotarod - Rotating Rats
  • treepipit - Tree Pipits in Franconian Oak Forests
  • vision - Unaided Distance Vision

On CRAN:

Conda:

13.26 score 82 packages 2.2k scripts 46k downloads 135 mentions 72 exports 13 dependencies

Last updated from:9cc7debad6. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK174
linux-devel-x86_64OK200
source / vignettesOK441
linux-release-arm64OK173
linux-release-x86_64OK173
macos-release-arm64OK129
macos-release-x86_64OK492
macos-oldrel-arm64OK147
macos-oldrel-x86_64OK241
windows-develOK184
windows-releaseOK169
windows-oldrelOK146
wasm-releaseOK93

Exports:ansari_testansari_trafoapproximateApproxNullDistributionAsymptNullDistributionasymptoticchisq_testcmh_testconfintconover_testconsal_trafocovariancedpermexactExactNullDistributionexpectationf_trafofisyat_testfligner_testfligner_trafofmaxstat_trafofriedman_testid_trafoindependence_testinitializeklotz_testklotz_trafokoziol_testkoziol_trafokruskal_testlbl_testlogrank_testlogrank_trafologrank_weightmaxstat_testmaxstat_trafomcp_trafomedian_testmedian_trafomh_testmidpvaluemood_testmood_trafonormal_testnormal_trafoof_trafoofmaxstat_trafooneway_testppermpvaluepvalue_intervalqpermquade_testquadrant_testrank_traforpermsavage_testsavage_trafoshowsign_testsizespearman_teststatisticsupportsurv_testsymmetry_testtaha_testtrafovariancewilcox_testwilcoxsign_testzheng_trafo

Dependencies:codetoolslatticelibcoinMASSMatrixmatrixStatsmodeltoolsmultcompmvtnormsandwichsurvivalTH.datazoo

A Lego System for Conditional Inference

Rendered fromLegoCondInf.Rnwusingutils::Sweaveon May 21 2026.

Last update: 2026-03-11
Started: 2015-01-12

coin: A Computational Framework for Conditional Inference

Rendered fromcoin.Rnwusingutils::Sweaveon May 21 2026.

Last update: 2026-03-11
Started: 2015-01-12

Implementing a Class of Permutation Tests: The coin Package

Rendered fromImplementation.Rnwusingutils::Sweaveon May 21 2026.

Last update: 2026-03-11
Started: 2018-11-09

Order-restricted Scores Test

Rendered fromMAXtest.Rnwusingutils::Sweaveon May 21 2026.

Last update: 2026-03-11
Started: 2015-01-12

Readme and manuals

Help Manual

Help pageTopics
General Information on the 'coin' Packagecoin-package coin
Genetic Components of Alcoholismalpha
Smoking and Alzheimer's Diseasealzheimer
Toxicological Study on Female Wistar Ratsasat
Tests of Independence in Two- or Three-Way Contingency Tableschisq_test chisq_test.formula chisq_test.IndependenceProblem chisq_test.table cmh_test cmh_test.formula cmh_test.IndependenceProblem cmh_test.table lbl_test lbl_test.formula lbl_test.IndependenceProblem lbl_test.table
Correlation Testsfisyat_test fisyat_test.formula fisyat_test.IndependenceProblem koziol_test koziol_test.formula koziol_test.IndependenceProblem quadrant_test quadrant_test.formula quadrant_test.IndependenceProblem spearman_test spearman_test.formula spearman_test.IndependenceProblem
Coarse Woody DebrisCWD
Extraction of the Expectation, Variance and Covariance of the Linear Statisticcovariance covariance,CovarianceMatrix-method covariance,IndependenceLinearStatistic-method covariance,IndependenceTest-method covariance,QuadTypeIndependenceTestStatistic-method covariance-methods expectation expectation,IndependenceLinearStatistic-method expectation,IndependenceTest-method expectation-methods variance variance,CovarianceMatrix-method variance,IndependenceLinearStatistic-method variance,IndependenceTest-method variance,Variance-method variance-methods
Malignant Glioma Pilot Studyglioma
Gastrointestinal Tumor Study GroupGTSG
Left Ventricular Ejection Fractionhohnloser
Class '"IndependenceLinearStatistic"'IndependenceLinearStatistic-class initialize,IndependenceLinearStatistic-method
Class '"IndependenceProblem"'IndependenceProblem-class initialize,IndependenceProblem-method
General Independence Testindependence_test independence_test.formula independence_test.IndependenceProblem independence_test.table
Class '"IndependenceTest"' and Its Subclassesconfint,IndependenceTest-method confint,ScalarIndependenceTestConfint-method IndependenceTest-class MaxTypeIndependenceTest-class QuadTypeIndependenceTest-class ScalarIndependenceTest-class ScalarIndependenceTestConfint-class show,IndependenceTest-method show,MaxTypeIndependenceTest-method show,QuadTypeIndependenceTest-method show,ScalarIndependenceTest-method show,ScalarIndependenceTestConfint-method
Class '"IndependenceTestProblem"'IndependenceTestProblem-class initialize,IndependenceTestProblem-method
Class '"IndependenceTestStatistic"' and Its SubclassesIndependenceTestStatistic-class initialize,IndependenceTestStatistic-method initialize,MaxTypeIndependenceTestStatistic-method initialize,QuadTypeIndependenceTestStatistic-method initialize,ScalarIndependenceTestStatistic-method MaxTypeIndependenceTestStatistic-class QuadTypeIndependenceTestStatistic-class ScalarIndependenceTestStatistic-class
Income and Job Satisfactionjobsatisfaction
Two- and K-Sample Location Testskruskal_test kruskal_test.formula kruskal_test.IndependenceProblem median_test median_test.formula median_test.IndependenceProblem normal_test normal_test.formula normal_test.IndependenceProblem oneway_test oneway_test.formula oneway_test.IndependenceProblem savage_test savage_test.formula savage_test.IndependenceProblem wilcox_test wilcox_test.formula wilcox_test.IndependenceProblem
Maternal Drinking and Congenital Sex Organ Malformationmalformations
Marginal Homogeneity Testsmh_test mh_test.formula mh_test.SymmetryProblem mh_test.table
Generalized Maximally Selected Statisticsmaxstat_test maxstat_test.formula maxstat_test.IndependenceProblem maxstat_test.table
Chromosomal Effects of Mercury-Contaminated Fish Consumptionmercuryfish
Acute Painful Diabetic Neuropathyneuropathy
Specification of the Reference Distributionapproximate asymptotic exact
Class '"NullDistribution"' and Its SubclassesApproxNullDistribution-class AsymptNullDistribution-class ExactNullDistribution-class NullDistribution-class
Computation of the Reference DistributionApproxNullDistribution ApproxNullDistribution,MaxTypeIndependenceTestStatistic-method ApproxNullDistribution,QuadTypeIndependenceTestStatistic-method ApproxNullDistribution,ScalarIndependenceTestStatistic-method ApproxNullDistribution-methods AsymptNullDistribution AsymptNullDistribution,MaxTypeIndependenceTestStatistic-method AsymptNullDistribution,QuadTypeIndependenceTestStatistic-method AsymptNullDistribution,ScalarIndependenceTestStatistic-method AsymptNullDistribution-methods ExactNullDistribution ExactNullDistribution,QuadTypeIndependenceTestStatistic-method ExactNullDistribution,ScalarIndependenceTestStatistic-method ExactNullDistribution-methods
Ovarian Carcinomaocarcinoma
Computation of the Permutation Distributiondperm dperm,IndependenceTest-method dperm,NullDistribution-method dperm-methods pperm pperm,IndependenceTest-method pperm,NullDistribution-method pperm-methods qperm qperm,IndependenceTest-method qperm,NullDistribution-method qperm-methods rperm rperm,IndependenceTest-method rperm,NullDistribution-method rperm-methods support support,IndependenceTest-method support,NullDistribution-method support-methods
Multiple Dosing Photococarcinogenicity Experimentphotocar
Class '"PValue"'PValue-class
Computation of the p-Value, Mid-p-Value, p-Value Interval and Test Sizemidpvalue midpvalue,ApproxNullDistribution-method midpvalue,IndependenceTest-method midpvalue,NullDistribution-method midpvalue-methods pvalue pvalue,ApproxNullDistribution-method pvalue,IndependenceTest-method pvalue,MaxTypeIndependenceTest-method pvalue,NullDistribution-method pvalue,PValue-method pvalue-methods pvalue_interval pvalue_interval,IndependenceTest-method pvalue_interval,NullDistribution-method pvalue_interval-methods size size,IndependenceTest-method size,NullDistribution-method size-methods
Rotating Ratsrotarod
Two- and K-Sample Scale Testsansari_test ansari_test.formula ansari_test.IndependenceProblem conover_test conover_test.formula conover_test.IndependenceProblem fligner_test fligner_test.formula fligner_test.IndependenceProblem klotz_test klotz_test.formula klotz_test.IndependenceProblem mood_test mood_test.formula mood_test.IndependenceProblem taha_test taha_test.formula taha_test.IndependenceProblem
Extraction of the Test Statistic and the Linear Statisticstatistic statistic,IndependenceLinearStatistic-method statistic,IndependenceTest-method statistic,IndependenceTestStatistic-method statistic-methods
Two- and K-Sample Tests for Censored Datalogrank_test logrank_test.formula logrank_test.IndependenceProblem surv_test
Class '"SymmetryProblem"'initialize,SymmetryProblem-method SymmetryProblem-class
General Symmetry Testsymmetry_test symmetry_test.formula symmetry_test.SymmetryProblem symmetry_test.table
Symmetry Testsfriedman_test friedman_test.formula friedman_test.SymmetryProblem quade_test quade_test.formula quade_test.SymmetryProblem sign_test sign_test.formula sign_test.SymmetryProblem wilcoxsign_test wilcoxsign_test.formula wilcoxsign_test.SymmetryProblem
Functions for Data Transformationansari_trafo consal_trafo fligner_trafo fmaxstat_trafo f_trafo id_trafo klotz_trafo koziol_trafo logrank_trafo logrank_weight maxstat_trafo mcp_trafo median_trafo mood_trafo normal_trafo ofmaxstat_trafo of_trafo rank_trafo savage_trafo trafo zheng_trafo
Tree Pipits in Franconian Oak Foreststreepipit
Class '"VarCovar"' and its subclassesCovarianceMatrix-class initialize,CovarianceMatrix-method initialize,Variance-method VarCovar-class Variance-class
Unaided Distance Visionvision