Package: coin 1.4-3
Torsten Hothorn
coin: Conditional Inference Procedures in a Permutation Test Framework
Conditional inference procedures for the general independence problem including two-sample, K-sample (non-parametric ANOVA), correlation, censored, ordered and multivariate problems described in <doi:10.18637/jss.v028.i08>.
Authors:
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coin.pdf |coin.html✨
coin/json (API)
NEWS
| # Install 'coin' in R: |
| install.packages('coin', repos = c('https://r-forge.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://r-forge.r-project.org/projects/coin
Datasets:
- CWD - Coarse Woody Debris
- GTSG - Gastrointestinal Tumor Study Group
- alpha - Genetic Components of Alcoholism
- alzheimer - Smoking and Alzheimer's Disease
- asat - Toxicological Study on Female Wistar Rats
- glioma - Malignant Glioma Pilot Study
- hohnloser - Left Ventricular Ejection Fraction
- jobsatisfaction - Income and Job Satisfaction
- malformations - Maternal Drinking and Congenital Sex Organ Malformation
- mercuryfish - Chromosomal Effects of Mercury-Contaminated Fish Consumption
- neuropathy - Acute Painful Diabetic Neuropathy
- ocarcinoma - Ovarian Carcinoma
- photocar - Multiple Dosing Photococarcinogenicity Experiment
- rotarod - Rotating Rats
- treepipit - Tree Pipits in Franconian Oak Forests
- vision - Unaided Distance Vision
Last updated 5 months agofrom:092a2f5271. Checks:OK: 9. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 25 2024 |
| R-4.5-win-x86_64 | OK | Oct 25 2024 |
| R-4.5-linux-x86_64 | OK | Oct 25 2024 |
| R-4.4-win-x86_64 | OK | Oct 25 2024 |
| R-4.4-mac-aarch64 | OK | Oct 25 2024 |
| R-4.4-mac-x86_64 | OK | Sep 25 2024 |
| R-4.3-win-x86_64 | OK | Oct 25 2024 |
| R-4.3-mac-x86_64 | OK | Oct 25 2024 |
| R-4.3-mac-aarch64 | OK | Oct 25 2024 |
Exports:ansari_testansari_trafoapproximateApproxNullDistributionAsymptNullDistributionasymptoticchisq_testcmh_testconfintconover_testconsal_trafocovariancedpermexactExactNullDistributionexpectationf_trafofisyat_testfligner_testfligner_trafofmaxstat_trafofriedman_testid_trafoindependence_testinitializeklotz_testklotz_trafokoziol_testkoziol_trafokruskal_testlbl_testlogrank_testlogrank_trafologrank_weightmaxstat_testmaxstat_trafomcp_trafomedian_testmedian_trafomh_testmidpvaluemood_testmood_trafonormal_testnormal_trafoof_trafoofmaxstat_trafooneway_testppermpvaluepvalue_intervalqpermquade_testquadrant_testrank_traforpermsavage_testsavage_trafoshowsign_testsizespearman_teststatisticsupportsurv_testsymmetry_testtaha_testtrafovariancewilcox_testwilcoxsign_testzheng_trafo
Dependencies:codetoolslatticelibcoinMASSMatrixmatrixStatsmodeltoolsmultcompmvtnormsandwichsurvivalTH.datazoo
A Lego System for Conditional Inference
Rendered fromLegoCondInf.Rnwusingutils::Sweaveon Oct 25 2024.Last update: 2021-02-08
Started: 2015-01-12
coin: A Computational Framework for Conditional Inference
Rendered fromcoin.Rnwusingutils::Sweaveon Oct 25 2024.Last update: 2019-05-27
Started: 2015-01-12
Implementing a Class of Permutation Tests: The coin Package
Rendered fromImplementation.Rnwusingutils::Sweaveon Oct 25 2024.Last update: 2019-12-13
Started: 2018-11-09
Order-restricted Scores Test
Rendered fromMAXtest.Rnwusingutils::Sweaveon Oct 25 2024.Last update: 2021-02-08
Started: 2015-01-12
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| General Information on the 'coin' Package | coin-package coin |
| Genetic Components of Alcoholism | alpha |
| Smoking and Alzheimer's Disease | alzheimer |
| Toxicological Study on Female Wistar Rats | asat |
| Tests of Independence in Two- or Three-Way Contingency Tables | chisq_test chisq_test.formula chisq_test.IndependenceProblem chisq_test.table cmh_test cmh_test.formula cmh_test.IndependenceProblem cmh_test.table lbl_test lbl_test.formula lbl_test.IndependenceProblem lbl_test.table |
| Correlation Tests | fisyat_test fisyat_test.formula fisyat_test.IndependenceProblem koziol_test koziol_test.formula koziol_test.IndependenceProblem quadrant_test quadrant_test.formula quadrant_test.IndependenceProblem spearman_test spearman_test.formula spearman_test.IndependenceProblem |
| Coarse Woody Debris | CWD |
| Extraction of the Expectation, Variance and Covariance of the Linear Statistic | covariance covariance,CovarianceMatrix-method covariance,IndependenceLinearStatistic-method covariance,IndependenceTest-method covariance,QuadTypeIndependenceTestStatistic-method covariance-methods expectation expectation,IndependenceLinearStatistic-method expectation,IndependenceTest-method expectation-methods variance variance,CovarianceMatrix-method variance,IndependenceLinearStatistic-method variance,IndependenceTest-method variance,Variance-method variance-methods |
| Malignant Glioma Pilot Study | glioma |
| Gastrointestinal Tumor Study Group | GTSG |
| Left Ventricular Ejection Fraction | hohnloser |
| Class '"IndependenceLinearStatistic"' | IndependenceLinearStatistic-class initialize,IndependenceLinearStatistic-method |
| Class '"IndependenceProblem"' | IndependenceProblem-class initialize,IndependenceProblem-method |
| General Independence Test | independence_test independence_test.formula independence_test.IndependenceProblem independence_test.table |
| Class '"IndependenceTest"' and Its Subclasses | confint,IndependenceTest-method confint,ScalarIndependenceTestConfint-method IndependenceTest-class MaxTypeIndependenceTest-class QuadTypeIndependenceTest-class ScalarIndependenceTest-class ScalarIndependenceTestConfint-class show,IndependenceTest-method show,MaxTypeIndependenceTest-method show,QuadTypeIndependenceTest-method show,ScalarIndependenceTest-method show,ScalarIndependenceTestConfint-method |
| Class '"IndependenceTestProblem"' | IndependenceTestProblem-class initialize,IndependenceTestProblem-method |
| Class '"IndependenceTestStatistic"' and Its Subclasses | IndependenceTestStatistic-class initialize,IndependenceTestStatistic-method initialize,MaxTypeIndependenceTestStatistic-method initialize,QuadTypeIndependenceTestStatistic-method initialize,ScalarIndependenceTestStatistic-method MaxTypeIndependenceTestStatistic-class QuadTypeIndependenceTestStatistic-class ScalarIndependenceTestStatistic-class |
| Income and Job Satisfaction | jobsatisfaction |
| Two- and K-Sample Location Tests | kruskal_test kruskal_test.formula kruskal_test.IndependenceProblem median_test median_test.formula median_test.IndependenceProblem normal_test normal_test.formula normal_test.IndependenceProblem oneway_test oneway_test.formula oneway_test.IndependenceProblem savage_test savage_test.formula savage_test.IndependenceProblem wilcox_test wilcox_test.formula wilcox_test.IndependenceProblem |
| Maternal Drinking and Congenital Sex Organ Malformation | malformations |
| Marginal Homogeneity Tests | mh_test mh_test.formula mh_test.SymmetryProblem mh_test.table |
| Generalized Maximally Selected Statistics | maxstat_test maxstat_test.formula maxstat_test.IndependenceProblem maxstat_test.table |
| Chromosomal Effects of Mercury-Contaminated Fish Consumption | mercuryfish |
| Acute Painful Diabetic Neuropathy | neuropathy |
| Specification of the Reference Distribution | approximate asymptotic exact |
| Class '"NullDistribution"' and Its Subclasses | ApproxNullDistribution-class AsymptNullDistribution-class ExactNullDistribution-class NullDistribution-class |
| Computation of the Reference Distribution | ApproxNullDistribution ApproxNullDistribution,MaxTypeIndependenceTestStatistic-method ApproxNullDistribution,QuadTypeIndependenceTestStatistic-method ApproxNullDistribution,ScalarIndependenceTestStatistic-method ApproxNullDistribution-methods AsymptNullDistribution AsymptNullDistribution,MaxTypeIndependenceTestStatistic-method AsymptNullDistribution,QuadTypeIndependenceTestStatistic-method AsymptNullDistribution,ScalarIndependenceTestStatistic-method AsymptNullDistribution-methods ExactNullDistribution ExactNullDistribution,QuadTypeIndependenceTestStatistic-method ExactNullDistribution,ScalarIndependenceTestStatistic-method ExactNullDistribution-methods |
| Ovarian Carcinoma | ocarcinoma |
| Computation of the Permutation Distribution | dperm dperm,IndependenceTest-method dperm,NullDistribution-method dperm-methods pperm pperm,IndependenceTest-method pperm,NullDistribution-method pperm-methods qperm qperm,IndependenceTest-method qperm,NullDistribution-method qperm-methods rperm rperm,IndependenceTest-method rperm,NullDistribution-method rperm-methods support support,IndependenceTest-method support,NullDistribution-method support-methods |
| Multiple Dosing Photococarcinogenicity Experiment | photocar |
| Class '"PValue"' | PValue-class |
| Computation of the p-Value, Mid-p-Value, p-Value Interval and Test Size | midpvalue midpvalue,ApproxNullDistribution-method midpvalue,IndependenceTest-method midpvalue,NullDistribution-method midpvalue-methods pvalue pvalue,ApproxNullDistribution-method pvalue,IndependenceTest-method pvalue,MaxTypeIndependenceTest-method pvalue,NullDistribution-method pvalue,PValue-method pvalue-methods pvalue_interval pvalue_interval,IndependenceTest-method pvalue_interval,NullDistribution-method pvalue_interval-methods size size,IndependenceTest-method size,NullDistribution-method size-methods |
| Rotating Rats | rotarod |
| Two- and K-Sample Scale Tests | ansari_test ansari_test.formula ansari_test.IndependenceProblem conover_test conover_test.formula conover_test.IndependenceProblem fligner_test fligner_test.formula fligner_test.IndependenceProblem klotz_test klotz_test.formula klotz_test.IndependenceProblem mood_test mood_test.formula mood_test.IndependenceProblem taha_test taha_test.formula taha_test.IndependenceProblem |
| Extraction of the Test Statistic and the Linear Statistic | statistic statistic,IndependenceLinearStatistic-method statistic,IndependenceTest-method statistic,IndependenceTestStatistic-method statistic-methods |
| Two- and K-Sample Tests for Censored Data | logrank_test logrank_test.formula logrank_test.IndependenceProblem surv_test |
| Class '"SymmetryProblem"' | initialize,SymmetryProblem-method SymmetryProblem-class |
| General Symmetry Test | symmetry_test symmetry_test.formula symmetry_test.SymmetryProblem symmetry_test.table |
| Symmetry Tests | friedman_test friedman_test.formula friedman_test.SymmetryProblem quade_test quade_test.formula quade_test.SymmetryProblem sign_test sign_test.formula sign_test.SymmetryProblem wilcoxsign_test wilcoxsign_test.formula wilcoxsign_test.SymmetryProblem |
| Functions for Data Transformation | ansari_trafo consal_trafo fligner_trafo fmaxstat_trafo f_trafo id_trafo klotz_trafo koziol_trafo logrank_trafo logrank_weight maxstat_trafo mcp_trafo median_trafo mood_trafo normal_trafo ofmaxstat_trafo of_trafo rank_trafo savage_trafo trafo zheng_trafo |
| Tree Pipits in Franconian Oak Forests | treepipit |
| Class '"VarCovar"' and its subclasses | CovarianceMatrix-class initialize,CovarianceMatrix-method initialize,Variance-method VarCovar-class Variance-class |
| Unaided Distance Vision | vision |
