Package: tram 1.2-1

Torsten Hothorn

tram: Transformation Models

Formula-based user-interfaces to specific transformation models implemented in package 'mlt' (<doi:10.32614/CRAN.package.mlt>, <doi:10.32614/CRAN.package.mlt.docreg>). Available models include Cox models, some parametric survival models (Weibull, etc.), models for ordered categorical variables, normal and non-normal (Box-Cox type) linear models, and continuous outcome logistic regression (Lohse et al., 2017, <doi:10.12688/f1000research.12934.1>). The underlying theory is described in Hothorn et al. (2018) <doi:10.1111/sjos.12291>. An extension to transformation models for clustered data is provided (Barbanti and Hothorn, 2022, <doi:10.1093/biostatistics/kxac048>). Multivariate conditional transformation models (Klein et al, 2022, <doi:10.1111/sjos.12501>) and shift-scale transformation models (Siegfried et al, 2023, <doi:10.1080/00031305.2023.2203177>) can be fitted as well.

Authors:Torsten Hothorn [aut, cre], Luisa Barbanti [aut], Sandra Siegfried [aut], Brian Ripley [ctb], Bill Venables [ctb], Douglas M. Bates [ctb], Nadja Klein [ctb]

tram_1.2-1.tar.gz
tram_1.2-1.zip(r-4.5)tram_1.2-1.zip(r-4.4)
tram_1.2-1.tgz(r-4.4-any)
tram_1.2-1.tar.gz(r-4.5-noble)tram_1.2-1.tar.gz(r-4.4-noble)
tram_1.2-1.tgz(r-4.4-emscripten)
tram.pdf |tram.html
tram/json (API)
NEWS

# Install 'tram' in R:
install.packages('tram', repos = c('https://r-forge.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://r-forge.r-project.org/projects/ctm

On CRAN:

6.80 score 6 packages 93 scripts 2.7k downloads 1 mentions 20 exports 24 dependencies

Last updated 1 months agofrom:07cfe1bbda. Checks:ERROR: 1 WARNING: 4. Indexed: yes.

TargetResultDate
Doc / VignettesFAILNov 19 2024
R-4.5-winWARNINGNov 19 2024
R-4.5-linuxWARNINGNov 19 2024
R-4.4-winWARNINGNov 19 2024
R-4.4-macWARNINGNov 19 2024

Exports:AaregBoxCoxColrComprisCoxphL1LehmannLmMmltmtramOVLperm_testPIPolrROCscore_testSurvregtramtram_dataTV

Dependencies:alabamabasefunBBcodetoolsconeprojFormulalatticeMASSMatrixmltmultcompmvtnormnloptrnumDerivorthopolynompolynomquadprogRcppRcppArmadillosandwichsurvivalTH.datavariableszoo

Readme and manuals

Help Manual

Help pageTopics
Aalen Additive Hazards ModelAareg
(Similar to) Box-Cox ModelsBoxCox
Continuous Outcome Logistic RegressionColr
Competing Risk RegressionCompris
Cox Proportional Hazards ModelCoxph
Proportional Reverse Time Hazards Linear RegressionLehmann
Normal Linear ModelLm
Multivariate Conditional Transformation ModelsMmlt
Transformation Models for Clustered Datamtram
Permutation Transformation Testsperm_test perm_test.tram
Ordered Categorical RegressionPolr
Transformation Score Tests and Confidence Intervalsscore_test score_test.tram
Parametric Survival ModelsSurvreg
Stratified Linear Transformation Modelstram tram_data
Methods for Stratified Linear Transformation Modelsas.mlt.tram coef.Lm coef.Survreg coef.tram estfun.tram L1 L1.default L1.tram logLik.tram model.frame.tram model.matrix.stram model.matrix.tram OVL OVL.default OVL.tram PI PI.default PI.tram plot.ROCtram plot.tram predict.stram predict.tram residuals.tram ROC ROC.default ROC.tram TV TV.default TV.tram vcov.tram