Package: tram 1.2-2

Torsten Hothorn

tram: Transformation Models

Formula-based user-interfaces to specific transformation models implemented in package 'mlt' (<doi:10.32614/CRAN.package.mlt>, <doi:10.32614/CRAN.package.mlt.docreg>). Available models include Cox models, some parametric survival models (Weibull, etc.), models for ordered categorical variables, normal and non-normal (Box-Cox type) linear models, and continuous outcome logistic regression (Lohse et al., 2017, <doi:10.12688/f1000research.12934.1>). The underlying theory is described in Hothorn et al. (2018) <doi:10.1111/sjos.12291>. An extension to transformation models for clustered data is provided (Barbanti and Hothorn, 2022, <doi:10.1093/biostatistics/kxac048>). Multivariate conditional transformation models (Klein et al, 2022, <doi:10.1111/sjos.12501>) and shift-scale transformation models (Siegfried et al, 2023, <doi:10.1080/00031305.2023.2203177>) can be fitted as well. The package contains an implementation of the tram-GCM test, a doubly robust score test, described in Kook et al. (2024, <doi:10.1080/01621459.2024.2395588>).

Authors:Torsten Hothorn [aut, cre], Luisa Barbanti [aut], Sandra Siegfried [aut], Lucas Kook [aut], Brian Ripley [ctb], Bill Venables [ctb], Douglas M. Bates [ctb], Nadja Klein [ctb]

tram_1.2-2.tar.gz
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tram.pdf |tram.html
tram/json (API)
NEWS

# Install 'tram' in R:
install.packages('tram', repos = c('https://r-forge.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://r-forge.r-project.org/projects/ctm

On CRAN:

7.96 score 6 packages 100 scripts 1.9k downloads 1 mentions 21 exports 24 dependencies

Last updated 8 hours agofrom:cd75b22816. Checks:5 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 20 2025
R-4.5-winOKJan 20 2025
R-4.5-linuxOKJan 20 2025
R-4.4-winOKJan 20 2025
R-4.4-macOKJan 20 2025

Exports:AaregBoxCoxColrComprisCoxphL1LehmannLmMmltmtramOVLperm_testPIPolrrobust_score_testROCscore_testSurvregtramtram_dataTV

Dependencies:alabamabasefunBBcodetoolsconeprojFormulalatticeMASSMatrixmltmultcompmvtnormnloptrnumDerivorthopolynompolynomquadprogRcppRcppArmadillosandwichsurvivalTH.datavariableszoo

Marginally Interpretable Linear Transformation Models

Rendered frommtram.Rnwusingknitr::knitron Jan 20 2025.

Last update: 2025-01-10
Started: 2019-09-19

Transformation Models: The tram Package

Rendered fromtram.Rnwusingknitr::knitron Jan 20 2025.

Last update: 2024-11-18
Started: 2017-12-17

Readme and manuals

Help Manual

Help pageTopics
Aalen Additive Hazards ModelAareg
(Similar to) Box-Cox ModelsBoxCox
Continuous Outcome Logistic RegressionColr
Competing Risk RegressionCompris
Cox Proportional Hazards ModelCoxph
Proportional Reverse Time Hazards Linear RegressionLehmann
Normal Linear ModelLm
Multivariate Conditional Transformation ModelsMmlt
Transformation Models for Clustered Datamtram
Permutation Transformation Testsperm_test perm_test.tram
Ordered Categorical RegressionPolr
Doubly Robust Transformation Score Testrobust_score_test robust_score_test.tram
Transformation Score Tests and Confidence Intervalsscore_test score_test.tram
Parametric Survival ModelsSurvreg
Stratified Linear Transformation Modelstram tram_data
Methods for Stratified Linear Transformation Modelsas.mlt.tram coef.Lm coef.Survreg coef.tram estfun.tram L1 L1.default L1.tram logLik.tram model.frame.tram model.matrix.stram model.matrix.tram OVL OVL.default OVL.tram PI PI.default PI.tram plot.ROCtram plot.tram predict.stram predict.tram residuals.tram ROC ROC.default ROC.tram TV TV.default TV.tram vcov.tram