Package: PreProcess 3.1.7
![](https://r-universe.dev/static/nobody.jpg)
Kevin R. Coombes
PreProcess: Basic Functions for Pre-Processing Microarrays
Provides classes to pre-process microarray gene expression data as part of the OOMPA collection of packages described at <http://oompa.r-forge.r-project.org/>.
Authors:
PreProcess_3.1.7.tar.gz
PreProcess_3.1.7.zip(r-4.5)PreProcess_3.1.7.zip(r-4.4)PreProcess_3.1.7.zip(r-4.3)
PreProcess_3.1.7.tgz(r-4.4-any)PreProcess_3.1.7.tgz(r-4.3-any)
PreProcess_3.1.7.tar.gz(r-4.5-noble)PreProcess_3.1.7.tar.gz(r-4.4-noble)
PreProcess_3.1.7.tgz(r-4.4-emscripten)PreProcess_3.1.7.tgz(r-4.3-emscripten)
PreProcess.pdf |PreProcess.html✨
PreProcess/json (API)
NEWS
# Install 'PreProcess' in R: |
install.packages('PreProcess', repos = c('https://r-forge.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://r-forge.r-project.org/projects/oompa
Last updated 3 days agofrom:188f1924ef. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Sep 05 2024 |
R-4.5-win | OK | Sep 05 2024 |
R-4.5-linux | OK | Sep 05 2024 |
R-4.4-win | OK | Sep 05 2024 |
R-4.4-mac | OK | Sep 05 2024 |
R-4.3-win | OK | Sep 05 2024 |
R-4.3-mac | OK | Sep 05 2024 |
Exports:analyzeChannelchannelizeChannelTypeCompleteChannelellipsef.above.threshf.cordf.oneway.rankingsf.qqf.qtfliplrflipudgetDesignmakeDefaultPipelinePIPELINE.MDACC.DEFAULTPIPELINE.STANDARDPROC.BACKGROUNDPROC.CORRECTED.SIGNALPROC.GLOBAL.NORMALIZATIONPROC.LOG.TRANSFORMPROC.MEDIAN.EXPRESSED.NORMALIZATIONPROC.NEG.CORRECTED.SIGNALPROC.SD.SIGNALPROC.SIGNALPROC.SIGNAL.TO.NOISEPROC.SUBSET.MEAN.NORMALIZATIONPROC.SUBSET.NORMALIZATIONPROC.SUBTRACTORPROC.THRESHOLDprocesssetDesign
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Class "Channel" | Channel Channel-class hist,Channel-method image,Channel-method plot,Channel,missing-method print,Channel-method show,Channel-method summary,Channel-method |
Method "channelize" | channelize channelize,ANY-method channelize-method |
Class "ChannelType" | ChannelType ChannelType-class getDesign print,ChannelType-method setDesign show,ChannelType-method summary,ChannelType-method |
Class "CompleteChannel" | analyze,CompleteChannel-method as.data.frame,CompleteChannel-method channelize,CompleteChannel-method CompleteChannel CompleteChannel-class image,CompleteChannel-method plot,CompleteChannel,missing-method print,CompleteChannel-method PROC.BACKGROUND PROC.CORRECTED.SIGNAL PROC.NEG.CORRECTED.SIGNAL PROC.SD.SIGNAL PROC.SIGNAL PROC.SIGNAL.TO.NOISE process,CompleteChannel,Processor-method show,CompleteChannel-method summary,CompleteChannel-method |
Methods "process" and "analyze" | analyze analyze,ANY-method process process,ANY-method |
OOMPA graphical utility functions | ellipse f.qq f.qt |
OOMPA Matrix Utility Functions | fliplr flipud |
Class "Pipeline" | makeDefaultPipeline Pipeline Pipeline-class PIPELINE.MDACC.DEFAULT PIPELINE.STANDARD process,ANY,Pipeline-method summary,Pipeline-method |
Class "Processor" | PROC.GLOBAL.NORMALIZATION PROC.LOG.TRANSFORM PROC.MEDIAN.EXPRESSED.NORMALIZATION PROC.SUBSET.MEAN.NORMALIZATION PROC.SUBSET.NORMALIZATION PROC.SUBTRACTOR PROC.THRESHOLD process,Channel,Processor-method process,Processor-method Processor Processor-class summary,Processor-method |
OOMPA Statistical Utility Functions | f.above.thresh f.cord f.oneway.rankings |