Package: PreProcess 3.1.9

Kevin R. Coombes

PreProcess: Basic Functions for Pre-Processing Microarrays

Provides classes to pre-process microarray gene expression data as part of the OOMPA collection of packages described at <http://oompa.r-forge.r-project.org/>.

Authors:Kevin R. Coombes [aut, cre]

PreProcess_3.1.9.tar.gz
PreProcess_3.1.9.zip(r-4.7)PreProcess_3.1.9.zip(r-4.6)PreProcess_3.1.9.zip(r-4.5)
PreProcess_3.1.9.tgz(r-4.6-any)PreProcess_3.1.9.tgz(r-4.5-any)
PreProcess_3.1.9.tar.gz(r-4.7-any)PreProcess_3.1.9.tar.gz(r-4.6-any)
PreProcess_3.1.9.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
PreProcess/json (API)
NEWS

# Install 'PreProcess' in R:
install.packages('PreProcess', repos = c('https://r-forge.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://r-forge.r-project.org/projects/oompa

On CRAN:

Conda:

microarraypreprocessing

5.02 score 35 scripts 261 downloads 1 mentions 32 exports 2 dependencies

Last updated from:969e77c656. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK109
source / vignettesOK149
linux-release-x86_64OK101
macos-release-arm64OK101
macos-oldrel-arm64OK81
windows-develOK79
windows-releaseOK82
windows-oldrelOK59
wasm-releaseOK86

Exports:analyzeChannelchannelizeChannelTypeCompleteChannelellipsef.above.threshf.cordf.oneway.rankingsf.qqf.qtfliplrflipudgetDesignmakeDefaultPipelinePIPELINE.MDACC.DEFAULTPIPELINE.STANDARDPROC.BACKGROUNDPROC.CORRECTED.SIGNALPROC.GLOBAL.NORMALIZATIONPROC.LOG.TRANSFORMPROC.MEDIAN.EXPRESSED.NORMALIZATIONPROC.NEG.CORRECTED.SIGNALPROC.SD.SIGNALPROC.SIGNALPROC.SIGNAL.TO.NOISEPROC.SUBSET.MEAN.NORMALIZATIONPROC.SUBSET.NORMALIZATIONPROC.SUBTRACTORPROC.THRESHOLDprocesssetDesign

Dependencies:clusteroompaBase

OOMPA PreProcessing

Rendered fromoompa-prep.Rnwusingutils::Sweaveon May 23 2026.

Last update: 2017-04-25
Started: 2014-02-10

Readme and manuals

Help Manual

Help pageTopics
Class "Channel"Channel Channel-class hist,Channel-method image,Channel-method plot,Channel,missing-method print,Channel-method show,Channel-method summary,Channel-method
Method "channelize"channelize channelize,ANY-method channelize-method
Class "ChannelType"ChannelType ChannelType-class getDesign print,ChannelType-method setDesign show,ChannelType-method summary,ChannelType-method
Class "CompleteChannel"analyze,CompleteChannel-method as.data.frame,CompleteChannel-method channelize,CompleteChannel-method CompleteChannel CompleteChannel-class image,CompleteChannel-method plot,CompleteChannel,missing-method print,CompleteChannel-method PROC.BACKGROUND PROC.CORRECTED.SIGNAL PROC.NEG.CORRECTED.SIGNAL PROC.SD.SIGNAL PROC.SIGNAL PROC.SIGNAL.TO.NOISE process,CompleteChannel,Processor-method show,CompleteChannel-method summary,CompleteChannel-method
Methods "process" and "analyze"analyze analyze,ANY-method process process,ANY-method
OOMPA graphical utility functionsellipse f.qq f.qt
OOMPA Matrix Utility Functionsfliplr flipud
Class "Pipeline"makeDefaultPipeline Pipeline Pipeline-class PIPELINE.MDACC.DEFAULT PIPELINE.STANDARD process,ANY,Pipeline-method summary,Pipeline-method
Class "Processor"PROC.GLOBAL.NORMALIZATION PROC.LOG.TRANSFORM PROC.MEDIAN.EXPRESSED.NORMALIZATION PROC.SUBSET.MEAN.NORMALIZATION PROC.SUBSET.NORMALIZATION PROC.SUBTRACTOR PROC.THRESHOLD process,Channel,Processor-method process,Processor-method Processor Processor-class summary,Processor-method
OOMPA Statistical Utility Functionsf.above.thresh f.cord f.oneway.rankings