Package: PreProcess 3.1.9

Kevin R. Coombes

PreProcess: Basic Functions for Pre-Processing Microarrays

Provides classes to pre-process microarray gene expression data as part of the OOMPA collection of packages described at <http://oompa.r-forge.r-project.org/>.

Authors:Kevin R. Coombes [aut, cre]

PreProcess_3.1.9.tar.gz
PreProcess_3.1.9.zip(r-4.7)PreProcess_3.1.9.zip(r-4.6)PreProcess_3.1.9.zip(r-4.5)
PreProcess_3.1.9.tgz(r-4.6-any)PreProcess_3.1.9.tgz(r-4.5-any)
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PreProcess_3.1.9.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
PreProcess/json (API)

# Install 'PreProcess' in R:

install.packages('PreProcess', repos = c('https://r-forge.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://r-forge.r-project.org/projects/oompa

On CRAN:

microarray preprocessing

5.13 score 50 scripts 367 downloads 1 mentions 32 exports 2 dependencies

Last updated from:969e77c656. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	102
source / vignettes	OK	168
linux-release-x86_64	OK	105
macos-release-arm64	OK	84
macos-oldrel-arm64	OK	82
windows-devel	OK	68
windows-release	OK	68
windows-oldrel	OK	77
wasm-release	OK	89

Exports:analyze Channel channelize ChannelType CompleteChannel ellipse f.above.thresh f.cord f.oneway.rankings f.qq f.qt fliplr flipud getDesign makeDefaultPipeline PIPELINE.MDACC.DEFAULT PIPELINE.STANDARD PROC.BACKGROUND PROC.CORRECTED.SIGNAL PROC.GLOBAL.NORMALIZATION PROC.LOG.TRANSFORM PROC.MEDIAN.EXPRESSED.NORMALIZATION PROC.NEG.CORRECTED.SIGNAL PROC.SD.SIGNAL PROC.SIGNAL PROC.SIGNAL.TO.NOISE PROC.SUBSET.MEAN.NORMALIZATION PROC.SUBSET.NORMALIZATION PROC.SUBTRACTOR PROC.THRESHOLD process setDesign

Dependencies:cluster oompaBase

OOMPA PreProcessing

Introduction | Getting Started | Processing in Pipelines

Rendered fromoompa-prep.Rnwusingutils::Sweave

Last update: 2017-04-25
Started: 2014-02-10

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Class "Channel"	Channel Channel-class hist,Channel-method image,Channel-method plot,Channel,missing-method print,Channel-method show,Channel-method summary,Channel-method
Method "channelize"	channelize channelize,ANY-method channelize-method
Class "ChannelType"	ChannelType ChannelType-class getDesign print,ChannelType-method setDesign show,ChannelType-method summary,ChannelType-method
Class "CompleteChannel"	analyze,CompleteChannel-method as.data.frame,CompleteChannel-method channelize,CompleteChannel-method CompleteChannel CompleteChannel-class image,CompleteChannel-method plot,CompleteChannel,missing-method print,CompleteChannel-method PROC.BACKGROUND PROC.CORRECTED.SIGNAL PROC.NEG.CORRECTED.SIGNAL PROC.SD.SIGNAL PROC.SIGNAL PROC.SIGNAL.TO.NOISE process,CompleteChannel,Processor-method show,CompleteChannel-method summary,CompleteChannel-method
Methods "process" and "analyze"	analyze analyze,ANY-method process process,ANY-method
OOMPA graphical utility functions	ellipse f.qq f.qt
OOMPA Matrix Utility Functions	fliplr flipud
Class "Pipeline"	makeDefaultPipeline Pipeline Pipeline-class PIPELINE.MDACC.DEFAULT PIPELINE.STANDARD process,ANY,Pipeline-method summary,Pipeline-method
Class "Processor"	PROC.GLOBAL.NORMALIZATION PROC.LOG.TRANSFORM PROC.MEDIAN.EXPRESSED.NORMALIZATION PROC.SUBSET.MEAN.NORMALIZATION PROC.SUBSET.NORMALIZATION PROC.SUBTRACTOR PROC.THRESHOLD process,Channel,Processor-method process,Processor-method Processor Processor-class summary,Processor-method
OOMPA Statistical Utility Functions	f.above.thresh f.cord f.oneway.rankings