Package: tramnet 0.1-0

Lucas Kook

tramnet: Penalized Transformation Models

Partially penalized versions of specific transformation models implemented in package 'mlt'. Available models include a fully parametric version of the Cox model, other parametric survival models (Weibull, etc.), models for binary and ordered categorical variables, normal and transformed-normal (Box-Cox type) linear models, and continuous outcome logistic regression. Hyperparameter tuning is facilitated through model-based optimization functionalities from package 'mlr3MBO'. The methodology is described in Kook et al. (2021) <doi:10.32614/RJ-2021-054>. Transformation models and model-based optimization are described in Hothorn et al. (2019) <doi:10.1111/sjos.12291> and Bischl et al. (2016) <arxiv:1703.03373>, respectively.

Authors:Lucas Kook [cre, aut], Balint Tamasi [ctb], Sandra Siegfried [ctb], Samuel Pawel [ctb], Torsten Hothorn [ctb]

tramnet_0.1-0.tar.gz
tramnet_0.1-0.zip(r-4.5)tramnet_0.1-0.zip(r-4.4)
tramnet_0.1-0.tgz(r-4.4-any)
tramnet_0.1-0.tar.gz(r-4.5-noble)tramnet_0.1-0.tar.gz(r-4.4-noble)
tramnet_0.1-0.tgz(r-4.4-emscripten)
tramnet.pdf |tramnet.html
tramnet/json (API)
NEWS

# Install 'tramnet' in R:
install.packages('tramnet', repos = c('https://r-forge.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://r-forge.r-project.org/projects/ctm

On CRAN:

4.15 score 2 scripts 216 downloads 14 exports 59 dependencies

Last updated 14 days agofrom:07cfe1bbda. Checks:OK: 5. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 19 2024
R-4.5-winOKNov 19 2024
R-4.5-linuxOKNov 19 2024
R-4.4-winOKNov 19 2024
R-4.4-macOKNov 19 2024

Exports:BoxCoxNETColrNETCoxphNETcvl_tramnetLehmannNETLmNETmbo_recommendedmbo_tramnetplot_pathPolrNETprof_alphaprof_lambdaSurvregNETtramnet

Dependencies:alabamabackportsbasefunBBbbotkbitbit64checkmateclicodetoolsconeprojCVXRdata.tabledigestECOSolveRevaluateFormulafuturefuture.applyglobalsgmplatticelgrlistenvMASSMatrixmlbenchmlr3mlr3mbomlr3measuresmlr3miscmlr3tuningmltmultcompmvtnormnloptrnumDerivorthopolynomosqppalmerpenguinsparadoxparallellypolynomPRROCquadprogR6RcppRcppArmadilloRcppEigenRmpfrsandwichscsspacefillrsurvivalTH.datatramuuidvariableszoo

Readme and manuals

Help Manual

Help pageTopics
Cross-validating tramnet modelscvl_tramnet
Regularized transformation model classesBoxCoxNET ColrNET CoxphNET LehmannNET LmNET PolrNET SurvregNET
S3 methods for class '"tramnet"'coef.tramnet coef.tramnet_Lm estfun.tramnet logLik.tramnet predict.tramnet print.summary.tramnet print.tramnet residuals.tramnet simulate.tramnet summary.tramnet
Fit recommended regularized tram based on model based optimization outputmbo_recommended
Model based optimization for regularized transformation modelsmbo_tramnet
Plot regularization pathsplot_path
Plot '"tramnet"' objectsplot.tramnet
Profiling tuning parametersprof_alpha
Profiling tuning parametersprof_lambda
Regularized transformation modelstramnet tramnet.formula tramnet.tram