Package: Eagle 1.0.3
Andrew George
Eagle: Multiple Locus Association Mapping on a Genome-Wide Scale
An implementation of multiple-locus association mapping on a genome-wide scale. 'Eagle' can handle inbred or outbred study populations, populations of arbitrary unknown complexity, and data larger than the memory capacity of the computer. Since 'Eagle' is based on linear mixed models, it is best suited to the analysis of data on continuous traits. However, it can tolerate non-normal data. 'Eagle' reports, as its findings, the best set of snp in strongest association with a trait. To perform an analysis, run 'OpenGUI()'. This opens a web browser to the menu-driven user interface for the input of data, and for performing genome-wide analysis.
Authors:
Eagle_1.0.3.tar.gz
Eagle_1.0.3.zip(r-4.5)Eagle_1.0.3.zip(r-4.4)Eagle_1.0.3.zip(r-4.3)
Eagle_1.0.3.tgz(r-4.4-x86_64)Eagle_1.0.3.tgz(r-4.4-arm64)Eagle_1.0.3.tgz(r-4.3-x86_64)Eagle_1.0.3.tgz(r-4.3-arm64)
Eagle_1.0.3.tar.gz(r-4.5-noble)Eagle_1.0.3.tar.gz(r-4.4-noble)
Eagle_1.0.3.tgz(r-4.4-emscripten)Eagle_1.0.3.tgz(r-4.3-emscripten)
Eagle.pdf |Eagle.html✨
Eagle/json (API)
| # Install 'Eagle' in R: |
| install.packages('Eagle', repos = c('https://r-forge.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://r-forge.r-project.org/projects/eagle
Last updated 4 years agofrom:7c939a2bfa. Checks:OK: 4 NOTE: 5. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 06 2024 |
| R-4.5-win-x86_64 | NOTE | Nov 06 2024 |
| R-4.5-linux-x86_64 | NOTE | Nov 06 2024 |
| R-4.4-win-x86_64 | NOTE | Nov 06 2024 |
| R-4.4-mac-x86_64 | NOTE | Nov 06 2024 |
| R-4.4-mac-aarch64 | NOTE | Nov 06 2024 |
| R-4.3-win-x86_64 | OK | Nov 06 2024 |
| R-4.3-mac-x86_64 | OK | Nov 06 2024 |
| R-4.3-mac-aarch64 | OK | Nov 06 2024 |
Exports:AMOpenGUIReadMapReadMarkerReadPhenoSummaryAM
Dependencies:base64encbslibcachemclicommonmarkcrayondata.tabledigestfastmapfontawesomefsgluehtmltoolshttpuvjquerylibjsonlitelaterlifecyclemagrittrmatrixcalcmemoisemimepromisesR6rappdirsRcppRcppEigenrlangsassshinyshinyBSshinyjsshinythemessourcetoolswithrxtable
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| A short title line describing what the package does | Eagle-package Eagle |
| multiple-locus association mapping | AM |
| Browser-based Graphical User Interface | OpenGUI |
| Read map file | ReadMap |
| Read marker data. | ReadMarker |
| Read phenotype file | ReadPheno |
| Summary of multiple locus association mapping results | SummaryAM |
